BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg341128

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09925.1 | Symbols:  | Pollen Ole e 1 allergen and extensin ...   760    0.0  


> AT3G09925.1 | Symbols:  | Pollen Ole e 1 allergen and extensin 
family protein | chr3:3051868-3052784 REVERSE LENGTH=516
Length=516

 Score =  760 bits (411),  Expect = 0.0
 Identities = 481/516 (93%), Gaps = 0/516 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGCAGAGGATCAGGACATTGGTTCTGCTAATAGAGATATTGTTTCTGGTGAGTTGT  60
            ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGCAGAGGATCACAACATTGGTTCTGCTAATAGAGATATTGTTTCTGGTGAGTTGT  60

Query  61   GTGACTCATATCACCACGGTAGCAGCGGATAATGATGGAGATGTGATTCACGTCGCCGGA  120
            |||||||||||||| |||  ||||||| ||||  ||||||||  ||||||||||||||||
Sbjct  61   GTGACTCATATCACTACGACAGCAGCGTATAACAATGGAGATAAGATTCACGTCGCCGGA  120

Query  121  AAAGTAATGTGCCAAGATTGTTCTCTGAACTACGATGAATGGATCAACGGTTCTGAACCC  180
            ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  121  AAAGTAATGTGTCAAGATTGTTCTCTGAACTACGACGAATGGATCAACGGTTCTGAACCC  180

Query  181  ATCAAAGGGGCAGTGGTATCAATCACATGTATGGACGAAAGGAGAAGAGTGAGATACTAT  240
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  181  ATCAAAGGGGCAGTGGTATCAATCACTTGTATGGACGAAAGGAGAAGAGTGAGCTACTAT  240

Query  241  GGCAGCGATAAGACCGATGAGAGAGGCCAGTTCGATCTAATCGTCAACAAAGTCCTCTAC  300
            |||||||||  |||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct  241  GGCAGCGATTTGACCGATGAGAGAGGCCAGTTCGATCTAATGGTCAACAAAGTCCTCTCC  300

Query  301  GGCGGCAAGGATCTCAAGCCTCAACTTTGTAATGTCCGGCTCGTGTCTTCTCCAGACCAG  360
              |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct  301  CACGGCAAGGTTCTCAAGCCTCAACTTTGTAATGTCCGGCTCGTGTCTTCTCCGGACCTG  360

Query  361  TCTTGTAACATCCCCACCAATTTTGGGAATGGTCAAACCGGAGTGAAGCTAGTTCGACCA  420
            || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  361  TCATGTAACATTCCCACCAATTTTGGGAACGGTCAAACCGGAGTGAAGCTAGTTCGACCA  420

Query  421  TTCATGGTATTCAAGGATCTGGTTAAGTATGTGGTCGGGCCATTTTATTATACCACTCCC  480
            ||||  || |||| ||||||||||||||||||||| || ||||||||||||||||| || 
Sbjct  421  TTCACAGTTTTCAGGGATCTGGTTAAGTATGTGGTTGGACCATTTTATTATACCACGCCA  480

Query  481  ATGTGTGAGACGCCTAAATTTGAAAACAAATACTAA  516
            ||||||||||||||||||||||||||||| ||||||
Sbjct  481  ATGTGTGAGACGCCTAAATTTGAAAACAACTACTAA  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5