BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341138
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily pro... 1956 0.0
> AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily protein
| chr3:3076874-3078907 FORWARD LENGTH=1446
Length=1446
Score = 1956 bits (1059), Expect = 0.0
Identities = 1321/1444 (91%), Gaps = 32/1444 (2%)
Strand=Plus/Plus
Query 16 CATCAAAACCATCCACAGTACGGTATAGCACAACCATCTCCTC-A-TC-CCTCTGATCCC 72
|||||||||||||||||||||||||||| |||||||||| ||| | || ||||||||| |
Sbjct 10 CATCAAAACCATCCACAGTACGGTATAGAACAACCATCTTCTCAATTCTCCTCTGATCTC 69
Query 73 TTCGGCTTCAACCTCGTTTCAGCGCCGGACCAGCACCATCGTCTTCATTTCACCGACCAT 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TTCGGCTTCAACCTCGTTTCAGCGCCGGACCAGCACCATCGTCTTCATTTCACCGACCAT 129
Query 133 GAGATAAGTTTCTTGCCACGTGGTATACAAGGGCTTACGGTGGCTGGAAACAACAGTAAC 192
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 130 GAGATAAGTTTATTGCCACGTGGAATACAAGGGCTTACGGTGGCTGGAAACAACAGTAAC 189
Query 193 ACTAATGTAGCGA-ACACA--AGT-G--GTGTTGGTGGGTTTAGTGGCTTTACGGACGGC 246
|||| | | ||| || | || | ||||||||||||||||||||||||||||||||
Sbjct 190 ACTATTACAACGATCCAGAGTGGTGGCTGTGTTGGTGGGTTTAGTGGCTTTACGGACGGC 249
Query 247 GGAGGAACAGGGAGGTGGCCGAGGCAAGAGACGTTGATGTTGTTGGAGGTCAGATCGCGT 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 250 GGAGGAACAGGGAGGTGGCCGAGGCAAGAGACGTTGATGTTGTTGGAGGTCAGATCTCGT 309
Query 307 CTTGATCACAAGTTCAAAGAAGCCAATCAAAAGGGTCCTCTCTGGGATGAAGTTTCTAGG 366
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 310 CTTGATCACAAGTTCAAAGAAGCTAATCAAAAGGGTCCTCTCTGGGATGAAGTTTCTAGG 369
Query 367 ATTATGTCGGAGGAACATGGATACACTAGGAGTGGCAAGAAGTGTAGAGAGAAGTTTGAG 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 370 ATTATGTCGGAGGAACATGGATACACTAGGAGTGGCAAGAAGTGTAGAGAGAAGTTCGAG 429
Query 427 AATCTCTACAAGTACTATAAAAAGACAAAAGAAGGCAAAGCCGGTCGGCGACAAGATGGT 486
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 430 AATCTCTACAAGTACTATAAAAAAACAAAAGAAGGCAAATCCGGTCGGCGACAAGATGGT 489
Query 487 AAAAACTATAGATTTTTCCGGCAGCTTGAAGCGATCTACGGTGAAGCCAAAGACCCGGTT 546
||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||
Sbjct 490 AAAAACTATAGATTTTTCCGGCAGCTTGAAGCGATATACGGCGAATCCAAAGACTCGGTT 549
Query 547 TCTTGCTATAACAACTCGCAGTTCATAATGACCAATGCTCTTCATAGT--TT-CCACGCT 603
||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||
Sbjct 550 TCTTGCTATAACAACACGCAGTTCATAATGACCAATGCTCTTCATAGTAATTTCCGCGCT 609
Query 604 TCGAACCTTCATAACAGT-GTCCCTCATCATCAGAAGCCCTTGATGACCAATAC---T-C 658
|| ||| ||||||||| | ||||||||||||||||| ||||||||||||||||| | |
Sbjct 610 TCTAACATTCATAACA-TCGTCCCTCATCATCAGAATCCCTTGATGACCAATACCAATAC 668
Query 659 --AAAGTCAAAGCCTTAGCATTTCTAACAATTTCAACTCCTCCTCTGAGTTGGATCTAAC 716
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 669 TCAAAGTCAAAGCCTTAGCATTTCTAACAATTTCAACTCCTCCTCCGATTTGGATCTAAC 728
Query 717 TTCCTCCTCTGAAGGAAACGAATCTACTAGAAGAGAGGAGATGAACTGGAAGGAAAGGAT 776
||| |||||||||||||||||| |||||| |||||||| |||| | |||||||||| |||
Sbjct 729 TTCTTCCTCTGAAGGAAACGAAACTACTAAAAGAGAGGGGATGCATTGGAAGGAAAAGAT 788
Query 777 TAAGGACTTCATCGGTGTTCATATGGAGAGGTTGATAGAGAAGCAGGATTTTTGGCTTGA 836
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 789 CAAGGAATTCATTGGTGTTCATATGGAGAGGTTGATAGAGAAGCAAGATTTTTGGCTTGA 848
Query 837 GAAGTTGATGAAGACTGTGGAAGACAAAGAAAATCAAAGGATGATGAGAGAAGAGAAATG 896
|||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 849 GAAGTTGATGAAGATTGTGGAAGACAAAGAACATCAAAGGATGCTGAGAGAAGAGGAATG 908
Query 897 GAAAAGGATTGAAGTGGCAAGGATCGATAAGGAACGTTTGTTTTGGACAAAGGAGAGGGA 956
|| ||||||||||| || |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 909 GAGAAGGATTGAAGCGGAAAGGATCGATAAGGAACGTTCGTTTTGGACAAAAGAGAGGGA 968
Query 957 GAGGATGGAAGCTCGGGATGTTGCGGTGATCGAGGCCTTGCAGTACTTGACGGGAAAAGC 1016
|||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 969 GAGGATTGAAGCTCGGGATGTTGCGGTGATTAATGCCTTGCAGTACTTGACGGGAAGGGC 1028
Query 1017 ATTGATAAGGCCGGAATCTTCTTCCCCTATTGAGAGGATTAACGG-AAGCGGAAGCGGTC 1075
||||||||||||||| ||||| || |||| ||||||||||| || || ||||||| |
Sbjct 1029 ATTGATAAGGCCGGATTCTTCGTCTCCTACAGAGAGGATTAATGGGAAT-GGAAGCGATA 1087
Query 1076 AAATGATGGTTGAAAATGAATATGCTGATGAAGAAAATAAGGGCAAGGTGGAGAAAAAAC 1135
||||||||| ||| ||||||| ||||||||||| ||||||||||||| |||| |||||||
Sbjct 1088 AAATGATGGCTGATAATGAATTTGCTGATGAAGGAAATAAGGGCAAGATGGATAAAAAAC 1147
Query 1136 AAATGAATAAGAAAAGGAAGGAGAAATGGTCAAACCACGGTGTGAATCATCCGAGAATCA 1195
||||||||||||||||||||||||||||||||| |||||| | ||||||||| |||| ||
Sbjct 1148 AAATGAATAAGAAAAGGAAGGAGAAATGGTCAAGCCACGGAGGGAATCATCCAAGAACCA 1207
Query 1196 AAGAGAATATGATGATATACAACAATCAAGAAACTA-GAATTAATGATTGTAGTCTAGAT 1254
|||||||||||||||||||||||||||||||||||| || ||||||||| | ||| ||||
Sbjct 1208 AAGAGAATATGATGATATACAACAATCAAGAAACTAAGA-TTAATGATTTTTGTCGAGAT 1266
Query 1255 GATGAGCAAGGCCATCACCAGGAAGGTTATTCACCTTCAAACTCCAAGGA---AGGAAAC 1311
||||| ||| ||||||| | ||||||| |||||||||||||||||| | ||||| |
Sbjct 1267 GATGACCAATGCCATCAT--G-AAGGTTACTCACCTTCAAACTCCAAGAACGCAGGAA-C 1322
Query 1312 -CCGAGCCGCAGCATTGTCATGGCGGCTAGTACAAAGTGCTTTCCATTGCCTGAAGGAGA 1370
|||||| |||||| || |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1323 TCCGAGCTGCAGCAATGCCATGGCAGCTAGTACAAAGTGCTTTCCATTGCTTGAAGGAGA 1382
Query 1371 TGGAGATCAAAACTTGTGGGATGGTTATGGTTTGAAGCTAAGGAAAGAAAATAATCATCA 1430
|||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1383 AGGAGATCAGAACTTGTGGGAGGGTTATGGTTTGAAGCAAAGGAAAGAAAATAATCATCA 1442
Query 1431 GTAA 1434
||||
Sbjct 1443 GTAA 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5