BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341139
Length=3237
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10010.1 | Symbols: DML2 | demeter-like 2 | chr3:3081814-308... 3478 0.0
AT4G34060.1 | Symbols: DML3 | demeter-like protein 3 | chr4:163... 97.1 9e-19
> AT3G10010.1 | Symbols: DML2 | demeter-like 2 | chr3:3081814-3088195
REVERSE LENGTH=4184
Length=4184
Score = 3478 bits (1883), Expect = 0.0
Identities = 2200/2352 (94%), Gaps = 25/2352 (1%)
Strand=Plus/Plus
Query 529 TCCAAGATGCAATC-AACAA-T-TTGTAGAAAGAAGCGGAGTCAAACAGATCGTATAGCA 585
|||||| ||||| | || || | || |||||||||||||||||||| | | ||| |||||
Sbjct 1189 TCCAAGTTGCAA-CTAA-AAGTGTT-TAGAAAGAAGCGGAGTCAAAGAAACCGTGTAGCA 1245
Query 586 AGCCAGTTCAATGCAAGGGTACTAGACCTACAGTGGAGACGCCAAACTCCAACAGGTACA 645
|||||||||||||||||| || | ||| | |||||| ||||||||| |||||||||||||
Sbjct 1246 AGCCAGTTCAATGCAAGGATATTGGACTTGCAGTGGCGACGCCAAAATCCAACAGGTACA 1305
Query 646 TCGCTAGCTGAAATATGGGAAAGAAGTTTGACTATTGATGCCATCACTAAGTTGTTTGAA 705
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1306 TCGCTAGCTGATATATGGGAAAGAAGTTTGACTATTGATGCTATCACTAAGTTGTTTGAA 1365
Query 706 GAACTAGACATCAACAAAGAGAGTTC-TTGTCTTCCACACAATAGAGAAACTGCACTTAT 764
||| ||||||||||||||||| | || ||| |||||||| ||||||||||||||||||||
Sbjct 1366 GAATTAGACATCAACAAAGAG-GGTCTTTGCCTTCCACATAATAGAGAAACTGCACTTAT 1424
Query 765 TCTATACAAAAAGGCATATGCAGAGCAACAGGCAATAGTGAAGTATAGCAAGAAGCAGAA 824
||||||||||||| | |||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1425 TCTATACAAAAAGTCGTATGAAGAGCAAAAGGCAATAGTGAAGTATAGCAAGAAGCAGAA 1484
Query 825 ACCGAAAGTACAGTTGGATCCTGAAACGAGTCGAGTGTGGAAACTCCTAATGTTAAGTAT 884
|||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1485 ACCGAAAGTACAATTGGATCCTGAAACGAGTCGAGTGTGGAAACTCTTAATGTCAAGTAT 1544
Query 885 CGACTGTGACGGTGTTGATGGATCAGATGAGGAAAAACGTAAATGGTGGGAAGAGGAGAG 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 CGACTGTGACGGTGTTGATGGATCAGATGAGGAAAAACGTAAATGGTGGGAAGAGGAGAG 1604
Query 945 GAACATGTTCCATGGACGTGCAAACTCGTTCATTGCGCGAATGCGTGTTGTCCAAGGCAA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 GAACATGTTCCATGGACGTGCAAACTCGTTCATTGCGCGAATGCGTGTTGTCCAAGGCAA 1664
Query 1005 TAGAACTTTCTCACCTTGGAAAGGATCGGTTGTAGATTCAGTAGTGGGAGTTTTCCTAAC 1064
|||||||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 1665 TAGAACTTTCTCACCTTGGAAAGGGTCAGTAGTGGATTCAGTAGTGGGAGTTTTCCTAAC 1724
Query 1065 CCAAAATGTCGCAGACCATTCATCAAGTTCTGCATATATGGATTTAGCTGCTGAGTTTCC 1124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 CCAGAATGTCGCAGACCATTCATCAAGTTCTGCATATATGGATTTAGCTGCTGAGTTTCC 1784
Query 1125 TGTGGACTGGAACTTCAACAAGGGATCATGTCTTGAAGAGTGGGGAAGTTCAGTAACTCA 1184
||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1785 TGTCGAGTGGAACTTCAACAAGGGATCATGTCATGAAGAGTGGGGAAGTTCAGTAACTCA 1844
Query 1185 TGAAACAATAAC-GAATTTGGATCCGAGAATTGGAGTTTCAACTCCAAGAATTCGCTATC 1243
||||||||| | |||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct 1845 AGAAACAATA-CTGAATTTGGATCCAAGAACTGGAGTTTCAACTCCAAGAATTCGCAATC 1903
Query 1244 CAACTTGCGTCATCATAGAGGAGATTGATGATGATGAGGACGACATTGATGTTGTTTGTA 1303
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1904 CAACTCGCGTCATCATAGAGGAGATTGATGATGATGAGAACGACATTGATGCTGTTTGTA 1963
Query 1304 GTCAGGAATCCTCTAAAACCAGTGACAGTTCCATAAGTTCTGCAAACCAATCAAAAATGA 1363
||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||
Sbjct 1964 GTCAGGAATCCTCTAAAACAAGTGACAGTTCCATAACTTCTGCAGACCAATCAAAAACGA 2023
Query 1364 TGCTGCTGGATCCATTTAACACAGTTTTGATGAACGAGCAAGTTGATTCCCAAATGGTAA 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2024 TGCTGCTGGATCCATTTAACACAGTTTTGATGAACGAGCAAGTTGATTCCCAAATGGTAA 2083
Query 1424 AAGGCAAAGGTCATATGCCATACACGGATGATCTTAACGGAAT-GTCCGAGGGGATTTCT 1482
|||||||||||||||| |||||||||||||||||||| | | | |||| ||||||||||
Sbjct 2084 AAGGCAAAGGTCATATACCATACACGGATGATCTTAATG-ACTTGTCCCAGGGGATTTCG 2142
Query 1483 ATGGTCTCATCTACTTCTACTCATTGCGAGTTGAACCTAAATGAAGTACCACCTGAAGTA 1542
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2143 ATGGTCTCATCTGCTTCTACTCATTGTGAGTTGAACCTAAATGAAGTACCACCTGAAGTA 2202
Query 1543 GAGTTGTGCAGTCATCAACAAGAATTGGAGAGTACCATTCAGTCACAAGACCAGCAAGAG 1602
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 2203 GAGTTGTGCAGCCATCAACAAGACCCGGAGAGTACCATTCAGACACAAGACCAGCAAGAG 2262
Query 1603 AACACAAGAACGGAGGATGTGAAGAAGAATAGGaaaaaaccaactacttccaaactaaag 1662
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 2263 AGCACAAGAACGGAGGATGTGAAGAAGAATAGGAAAAAACCAACTACCTCCAAACCAAAG 2322
Query 1663 aaaaagtcaaaggaaccagcaaagagcaa-caaaaagaaaagTTTTGACTGGGATAGTTT 1721
||||||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 2323 AAAAAGTCAAAGGAATCAGCAAAGAGCACGCAAAA-GAAAAGCGTTGACTGGGATAGTTT 2381
Query 1722 GAGAAAGCAAGCAGAAAGTGGCGGCCGAAAGAGAGAGAGAACAGAAAGAACAATGGACAC 1781
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2382 GAGAAAGGAAGCAGAAAGTGGTGGCCGAAAGAGAGAGAGAACAGAAAGAACAATGGACAC 2441
Query 1782 AGTTGATTGGGATGCACTTCGATGTACCGACGTAAACAAGATCGCCAATATTATCATAAA 1841
||||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||| ||
Sbjct 2442 AGTTGATTGGGATGCACTTCGATGTACAGACGTACACAAGATCGCTAATATAATCATCAA 2501
Query 1842 ACGAGGGATGAACAACATGCTTGCCGAAAGAATCAAGGCCTTCTTAAACAGACTGGTTCG 1901
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2502 ACGAGGGATGAACAACATGCTTGCCGAAAGAATCAAGGCCTTCTTAAACAGACTAGTTAA 2561
Query 1902 AAAACATGGAAGCATAGACTTGGAGTGGCTAAGAGATGTTCCCCCTGACCAAGCCAAGGA 1961
||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 2562 AAAACATGGAAGCATTGACTTAGAGTGGCTAAGAGATGTTCCTCCTGATAAAGCCAAGGA 2621
Query 1962 GTATCTACTAAGCATAAATGGATTAGGATTGAAAAGTGTGGAGTGTGTTAGACTTCTGTC 2021
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||
Sbjct 2622 GTATCTACTAAGCATAAACGGATTAGGATTGAAGAGTGTGGAGTGTGTTAGACTTTTGTC 2681
Query 2022 ACTACATCAGATTGCATTCCCTGTTGACACGAATGTCGGACGCATAGCTGTAAGACTAGG 2081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2682 ACTACATCAGATTGCATTCCCTGTTGACACGAATGTCGGACGCATAGCTGTAAGACTAGG 2741
Query 2082 ATGGGTTCCGTTACAGCCATTGCCTGACGAGCTGCAAATGCATCTTTTAGAGCTGTACCC 2141
||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 2742 ATGGGTTCCCTTACAGCCATTGCCCGACGAGCTGCAAATGCATCTTTTAGAGTTGTACCC 2801
Query 2142 AGTAT-TAGAATCAGTGCAAAAGTATCTCTGGCCACGCCTCTGCAAGCTTGACCAAAAAA 2200
||| | |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2802 AGT-TCTAGAGTCAGTTCAAAAGTACCTCTGGCCACGCCTCTGCAAGCTTGACCAAAAAA 2860
Query 2201 CCTTGTACGAGCTGCATTACCACATGATTACCTTTGGAAAGGTCTTTTGCACAAAAGTAA 2260
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2861 CCTTGTACGAGCTGCATTACCACATGATAACATTTGGAAAGGTCTTTTGCACAAAAGTAA 2920
Query 2261 AACCCAATTGCAATGCTTGTCCTATGAAGGCTGAGTGCCGACATTACGCTAGTGCACGTG 2320
|||||||||||||||| ||||| |||||||| ||||| ||||||||| ||||||||||||
Sbjct 2921 AACCCAATTGCAATGCATGTCCAATGAAGGCGGAGTGTCGACATTACTCTAGTGCACGTG 2980
Query 2321 CAAGCGCACGGCTTGCTCTACCCGAACCAGAGGAGAGTGAGAGAACAACAGTAATGGTCC 2380
||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||| |||
Sbjct 2981 CAAGCGCACGGCTTGCTTTACCAGAACCAGAGGAGAGTGACAGAACAAGTGTAATGATCC 3040
Query 2381 ACGAGAGAAGATATAAACGCAAGCCTTTTGTGGTTAATTTTCGACCATCCTTATTTCTTT 2440
| ||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3041 ATGAGAGGAGATCTAAACGCAAGCCTGTTGTGGTTAATTTTCGACCATCCTTATTTCTTT 3100
Query 2441 TTCAAGAAAAAGAGCAAGAAGCACAAAGATCCCAAAACTGTGAACCAATCATTGAGGAAC 2500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3101 ATCAAGAAAAAGAGCAAGAAGCACAAAGATCCCAAAACTGTGAACCAATCATTGAGGAAC 3160
Query 2501 CAGCATCACCAGAACCAGAGTATATAGAACATGATATTGAGGACTATCCTTGGAACAATA 2560
|||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| |
Sbjct 3161 CAGCATCACCAGAACCAGAGTATATAGAACATGATATTGAAGACTATCCTCGGGACAAAA 3220
Query 2561 ACAACGTTGGAACATCAAAGGATCCTTGGGAAAATAAGGACATAATTCCTACAATCATGC 2620
||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 3221 ACAACGTTGGAACATCAGAGGATCCTTGGGAAAATAAGGACGTAATTCCTACCATCATCC 3280
Query 2621 TCAACAAGGAAGCTGGTACATCACATC-T--GGTGGTCAATAAGGAAGCTGGTACATCAC 2677
|||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||
Sbjct 3281 TCAACAAGGAAGCTGGTACATCACATGATTTGGTGGTCAACAAGGAAGCTGGTACGTCAC 3340
Query 2678 AGGATTTGGTGGTACTAAGCACATATGCAGCAGCAATACCTAGACGTAAACTCAAGATCA 2737
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3341 ATGATTTGGTGGTACTAAGCACATATGCAGCAGCAATACCTAGACGTAAACTCAAGATCA 3400
Query 2738 AGGAAAAGCTACGCACAGAGCACAACGTCTATGAGCTCCCTAAGT-ACCATTCCATTCTA 2796
||||||||||||||||||||||| |||| | |||||||||| | | ||||||||||||||
Sbjct 3401 AGGAAAAGCTACGCACAGAGCACCACGTATTTGAGCTCCCTGA-TCACCATTCCATTCTA 3459
Query 2797 GAAGGGTTTGAGAGGC-ATGACGATGATGATTTAGTTCCCT-ACTTGTTAGCAATTTGCA 2854
|||||||||||||||| | || | ||| ||| |||| |||| |||||||||| ||||| |
Sbjct 3460 GAAGGGTTTGAGAGGCGA-GAAGCTGAGGATATAGT-CCCTTACTTGTTAGCCATTTGGA 3517
Query 2855 CGCCAGGTGAAA 2866
||||||||||||
Sbjct 3518 CGCCAGGTGAAA 3529
Score = 510 bits (276), Expect = 3e-143
Identities = 340/371 (92%), Gaps = 3/371 (1%)
Strand=Plus/Plus
Query 2867 AAGAGGAATCACATAATACAGTACGAGGAACAATATTGATACCTTGCAGAACAGCAATGA 2926
|||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 3632 AAGAGGAATCAC---AGACTGTACGAGGAACTATATTGATACCTTGCAGAACAGCAATGA 3688
Query 2927 GAGGTGGATTCCCTCTGAACGGCACATACTTCCAAACCAATGAGGTTTTTGCTGACCATG 2986
|||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 3689 GAGGTGGATTCCCTTTGAATGGCACATACTTCCAAACTAATGAGGTTTTTGCTGACCATG 3748
Query 2987 GCTCTAGCATCAACCCAATCGAAGTCCCAACACAATTGATATGGGATCTACGTAGAAGAA 3046
||||||||| ||||| ||||| ||||||||| || |||||||||||||| ||||||
Sbjct 3749 ACTCTAGCATAAACCCTATCGACGTCCCAACAGAACTGATATGGGATCTAAAAAGAAGAG 3808
Query 3047 TCGCATACTTTGGATCATCTGTATCCTCGATTTGTAAAGGTTTATCAGTGAAAGAAATTG 3106
|||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 3809 TCGCATACTTAGGATCCTCTGTATCCTCGATTTGTAAAGGTTTATCAGTGGAAGCCATAA 3868
Query 3107 AAGACAATTTCCAGGAAGGATATGTTTGTGTAAGGGGATTTGACCGGGAGAATCGTAAGC 3166
|| |||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 3869 AATACAATTTCCAGGAAGGATATGTCTGTGTAAGGGGATTCGACAGGGAGAATCGTAAGC 3928
Query 3167 CGAAGAGTCTAGTGAAAAGACTGCATTGTTCTCACGTAGCAATCAGAACTAAAGAGAAGA 3226
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3929 CAAAGAGTCTAGTGAAAAGACTGCATTGTTCTCACGTAGCAATCAGAACTAAAGAGAAGA 3988
Query 3227 CAGAGGAATGA 3237
|||||||||||
Sbjct 3989 CAGAGGAATGA 3999
Score = 342 bits (185), Expect = 1e-92
Identities = 263/298 (88%), Gaps = 16/298 (5%)
Strand=Plus/Plus
Query 227 TGCTAAAACCACAATATGATGTGTCAACTCCACAGAAGTTTCTTTGTGACCTTAATCTTA 286
||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 335 TGCAAAAACAACAATATGATGTGTCAACTCCGCAGAAGTTTCTTTGTGACCTTAATCTTA 394
Query 287 CACCTGAAGAGATGGTGAGCACCAGTGCGCAACTAACGGAACCTGAGTTTCCTGCAA-TA 345
||||||||||| |||||||||||||| |||||| ||| |||||||||| |||| ||| ||
Sbjct 395 CACCTGAAGAGTTGGTGAGCACCAGTACGCAACGAACAGAACCTGAGTCTCCT-CAAATA 453
Query 346 ACTTTAGAGACACCAGGAAAAA--CA-T-TGT--CTGA--A--A-C-TCACGACCGTATC 393
|||||| ||||||||||||||| | | || |||| | | | |||||||||||||
Sbjct 454 ACTTTAAAGACACCAGGAAAAAGTCTGTCTGAAACTGATCATGAGCCTCACGACCGTATC 513
Query 394 AAGAAGTCTGTTCTTGAAACTGGATCTCCTGCAGGAGTAAAGAAAAGAAAGAGAGCAAGA 453
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 514 AAGAAGTCTGTTCTTGGAACTGGATCTCCTGCAGCAGTAAAGAAAAGAAAGATAGCAAGA 573
Query 454 GATGATAAGAAAGTC-CAACTGGCAACACCAACATTAAAGAGAAAAAAGATCAGGCCA 510
||||| ||||| || || |||| |||||||||| |||||||||||||||||||||||
Sbjct 574 AATGATGAGAAA-TCTCAGCTGGAAACACCAACACTAAAGAGAAAAAAGATCAGGCCA 630
> AT4G34060.1 | Symbols: DML3 | demeter-like protein 3 | chr4:16314003-16319426
FORWARD LENGTH=3308
Length=3308
Score = 97.1 bits (52), Expect = 9e-19
Identities = 81/95 (85%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 2893 GGAACAATATTGATACCTTGCAGAACAGCAATGAGAGGTGG-ATTCCCTCTGAACGGCAC 2951
|||||||| ||||| || || |||||||||||| |||| || || || || || || ||
Sbjct 2786 GGAACAATTTTGATTCCATGTAGAACAGCAATGCGAGG-GGCCTTTCCACTTAATGGAAC 2844
Query 2952 ATACTTCCAAACCAATGAGGTTTTTGCTGACCATG 2986
|||||||||||||||||||||||||||||| ||||
Sbjct 2845 ATACTTCCAAACCAATGAGGTTTTTGCTGATCATG 2879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161035887030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5