BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341194
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10580.1 | Symbols: | Homeodomain-like superfamily protein ... 998 0.0
> AT3G10580.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:3307051-3308233 REVERSE LENGTH=899
Length=899
Score = 998 bits (540), Expect = 0.0
Identities = 758/861 (88%), Gaps = 23/861 (3%)
Strand=Plus/Plus
Query 1 ATGGATG-A--AATTCCGCTTTGGACGAGGGTCGATGACAAGCGTTTTGAGTCAGCTCTG 57
||||||| | ||||||| |||||| ||||| |||||| ||||||||||||| |||||||
Sbjct 4 ATGGATGCAGCAATTCCGATTTGGAAGAGGGACGATGATAAGCGTTTTGAGTTAGCTCTG 63
Query 58 GTTCAATT-CC--CAGAGGGTTCGCCGTATTTTTTGGAGAATATCGCTCAGTTTCTGCAG 114
|||| ||| || | |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 64 GTTCGATTCCCTGCTGAGGGTTCGCCGGATTTTTTAGAGAATATCGCTCAGTTTCTGCAG 123
Query 115 AAACCGTTGAAGGATGTGAAGTACTACTACCAAGCGTTGGTCGACGATGTTGCGCTGATC 174
|||||||| ||||| ||| | | |||||||||||| |||||||| |||||| ||||||||
Sbjct 124 AAACCGTTAAAGGAGGTGTACTCCTACTACCAAGCCTTGGTCGATGATGTTACGCTGATC 183
Query 175 GAATCGGGTAATTTTGCTTTGCCCAACTACAGGGACGATGATTACGTGTCACTGAAGGAA 234
||||||||||| | | |||||||||| ||| ||| |||||||||||||||||| ||||
Sbjct 184 GAATCGGGTAAGTATCCTTTGCCCAAGTACCCGGAAGATGATTACGTGTCACTGCCGGAA 243
Query 235 GCGACTAAGTCCAAAAACCAGGGCACGGGGAAAAAGAAGGGAATAGCTTGGTCACCA-AA 293
||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 244 GCGACTAAGTCTAAAACCCAGGGCACGGGGAAAAAGAAGGGAATACCTTGGTCACCAGAA 303
Query 294 CGAACACAAATTGTTTTTGGATGGACTAAACAAGTATGGGAAAGGAGATTGGAAGAGCAT 353
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 -GAACACAGATTGTTTTTGGATGGACTAAACAAGTATGGGAAAGGAGATTGGAAGAGCAT 362
Query 354 AGCGAGGGAATGTGTGAAGACAAGGAGCCCGATGCAAGTGGCTAGCCATGCTCAGAAGTA 413
| ||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 363 ATCGAGGGAATGTGTGACGTCAAGGAGCCCGATGCAAGTGGCAAGCCATGCTCAGAAGTA 422
Query 414 TTTTTTAAGG-AAAAACA-A-GAAGGGGAAACGCATGAGTATCCATGACATGCCTCTGGG 470
||| |||||| ||||| | | ||||||||||||| | ||||||||||| ||| |||||||
Sbjct 423 TTTCTTAAGGCAAAAAAATAAGAAGGGGAAACGCTTCAGTATCCATGATATGACTCTGGG 482
Query 471 AGATGCGGACAATGTAACCGTCCCTGTATCCCACTTGAATTCTACGGGCCAGCAGCCACA 530
|||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 483 AGATGCCGAAAATGTAACCGTCCCTGTATCCAACTTGAATTCTATGGGCCAGCAGCCACA 542
Query 531 GTTTGGA-GACCAAATTCTTCCGGATCATTATTAC--C-ACTGCTCCCAG-GACAATGTA 585
|||| | ||||||| || ||||||||||||| | | ||| ||||||| | |||||||
Sbjct 543 TTTTG-ATGACCAAAGTCCTCCGGATCATTATCAAGACTACTTCTCCCAGAG-CAATGTA 600
Query 586 ACCAATATCCCTGGATCCAACTTGGTGTTTATGGGCCAACAACCACATTTTGGTGGCCAA 645
|||| | |||||||| |||| || ||||||||||| ||||||| |||||||| ||||
Sbjct 601 ACCA-T--CCCTGGATGCAACATGCACTTTATGGGCCAGCAACCACGTTTTGGTGACCAA 657
Query 646 ATTCCTCCAAATCAA-AGTCACCCCTACTCCCGGGACAATGTAACCGTCCCTGAATCTAA 704
|||||||| | || | ||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 658 ATTCCTCCGGGTGAATA-TCACCCCTACTCCCGGGACAATGTAACCGTCACTGGATCCAA 716
Query 705 CTTGAAGCCTATGGGCGAGCAGCCACATTTTGGTGACCACATTTCTCCGGATCAATATGA 764
|||||| |||| ||| |||||||||||||| |||||| |||||||||||||||||||
Sbjct 717 CTTGAATTCTATTGGCCAGCAGCCACATTTTAATGACCAAATTTCTCCGGATCAATATGG 776
Query 765 CCGCGACTTCCTGGACAACTTCGGGTTTTTCTATGATGATGGTGAAGATGATGGGAGTTT 824
|||| |||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 777 CCGCTACTTGCAGGAAAACTTCGGGTTTTTCGATGATGATGGTGAAGATGATGGGAGTTT 836
Query 825 AGCAAGCTTTGAAAAACTATA 845
|||||||||| || |||||||
Sbjct 837 AGCAAGCTTTCAACAACTATA 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5