BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg341194 Length=858 Score E Sequences producing significant alignments: (Bits) Value AT3G10580.1 | Symbols: | Homeodomain-like superfamily protein ... 998 0.0 > AT3G10580.1 | Symbols: | Homeodomain-like superfamily protein | chr3:3307051-3308233 REVERSE LENGTH=899 Length=899 Score = 998 bits (540), Expect = 0.0 Identities = 758/861 (88%), Gaps = 23/861 (3%) Strand=Plus/Plus Query 1 ATGGATG-A--AATTCCGCTTTGGACGAGGGTCGATGACAAGCGTTTTGAGTCAGCTCTG 57 ||||||| | ||||||| |||||| ||||| |||||| ||||||||||||| ||||||| Sbjct 4 ATGGATGCAGCAATTCCGATTTGGAAGAGGGACGATGATAAGCGTTTTGAGTTAGCTCTG 63 Query 58 GTTCAATT-CC--CAGAGGGTTCGCCGTATTTTTTGGAGAATATCGCTCAGTTTCTGCAG 114 |||| ||| || | |||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 64 GTTCGATTCCCTGCTGAGGGTTCGCCGGATTTTTTAGAGAATATCGCTCAGTTTCTGCAG 123 Query 115 AAACCGTTGAAGGATGTGAAGTACTACTACCAAGCGTTGGTCGACGATGTTGCGCTGATC 174 |||||||| ||||| ||| | | |||||||||||| |||||||| |||||| |||||||| Sbjct 124 AAACCGTTAAAGGAGGTGTACTCCTACTACCAAGCCTTGGTCGATGATGTTACGCTGATC 183 Query 175 GAATCGGGTAATTTTGCTTTGCCCAACTACAGGGACGATGATTACGTGTCACTGAAGGAA 234 ||||||||||| | | |||||||||| ||| ||| |||||||||||||||||| |||| Sbjct 184 GAATCGGGTAAGTATCCTTTGCCCAAGTACCCGGAAGATGATTACGTGTCACTGCCGGAA 243 Query 235 GCGACTAAGTCCAAAAACCAGGGCACGGGGAAAAAGAAGGGAATAGCTTGGTCACCA-AA 293 ||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| || Sbjct 244 GCGACTAAGTCTAAAACCCAGGGCACGGGGAAAAAGAAGGGAATACCTTGGTCACCAGAA 303 Query 294 CGAACACAAATTGTTTTTGGATGGACTAAACAAGTATGGGAAAGGAGATTGGAAGAGCAT 353 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 -GAACACAGATTGTTTTTGGATGGACTAAACAAGTATGGGAAAGGAGATTGGAAGAGCAT 362 Query 354 AGCGAGGGAATGTGTGAAGACAAGGAGCCCGATGCAAGTGGCTAGCCATGCTCAGAAGTA 413 | ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| Sbjct 363 ATCGAGGGAATGTGTGACGTCAAGGAGCCCGATGCAAGTGGCAAGCCATGCTCAGAAGTA 422 Query 414 TTTTTTAAGG-AAAAACA-A-GAAGGGGAAACGCATGAGTATCCATGACATGCCTCTGGG 470 ||| |||||| ||||| | | ||||||||||||| | ||||||||||| ||| ||||||| Sbjct 423 TTTCTTAAGGCAAAAAAATAAGAAGGGGAAACGCTTCAGTATCCATGATATGACTCTGGG 482 Query 471 AGATGCGGACAATGTAACCGTCCCTGTATCCCACTTGAATTCTACGGGCCAGCAGCCACA 530 |||||| || ||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 483 AGATGCCGAAAATGTAACCGTCCCTGTATCCAACTTGAATTCTATGGGCCAGCAGCCACA 542 Query 531 GTTTGGA-GACCAAATTCTTCCGGATCATTATTAC--C-ACTGCTCCCAG-GACAATGTA 585 |||| | ||||||| || ||||||||||||| | | ||| ||||||| | ||||||| Sbjct 543 TTTTG-ATGACCAAAGTCCTCCGGATCATTATCAAGACTACTTCTCCCAGAG-CAATGTA 600 Query 586 ACCAATATCCCTGGATCCAACTTGGTGTTTATGGGCCAACAACCACATTTTGGTGGCCAA 645 |||| | |||||||| |||| || ||||||||||| ||||||| |||||||| |||| Sbjct 601 ACCA-T--CCCTGGATGCAACATGCACTTTATGGGCCAGCAACCACGTTTTGGTGACCAA 657 Query 646 ATTCCTCCAAATCAA-AGTCACCCCTACTCCCGGGACAATGTAACCGTCCCTGAATCTAA 704 |||||||| | || | ||||||||||||||||||||||||||||||| ||| ||| || Sbjct 658 ATTCCTCCGGGTGAATA-TCACCCCTACTCCCGGGACAATGTAACCGTCACTGGATCCAA 716 Query 705 CTTGAAGCCTATGGGCGAGCAGCCACATTTTGGTGACCACATTTCTCCGGATCAATATGA 764 |||||| |||| ||| |||||||||||||| |||||| ||||||||||||||||||| Sbjct 717 CTTGAATTCTATTGGCCAGCAGCCACATTTTAATGACCAAATTTCTCCGGATCAATATGG 776 Query 765 CCGCGACTTCCTGGACAACTTCGGGTTTTTCTATGATGATGGTGAAGATGATGGGAGTTT 824 |||| |||| | ||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 777 CCGCTACTTGCAGGAAAACTTCGGGTTTTTCGATGATGATGGTGAAGATGATGGGAGTTT 836 Query 825 AGCAAGCTTTGAAAAACTATA 845 |||||||||| || ||||||| Sbjct 837 AGCAAGCTTTCAACAACTATA 857 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41845044451 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5