BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341204
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10680.1 | Symbols: | HSP20-like chaperones superfamily pro... 2052 0.0
> AT3G10680.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr3:3337773-3339345 FORWARD LENGTH=1473
Length=1473
Score = 2052 bits (1111), Expect = 0.0
Identities = 1359/1479 (92%), Gaps = 15/1479 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCGATTTTCAAGAGACCAAGGCCGGGAGGTGGCCGTCATCCGCCACCGCTGGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGCGATTTTCAAGAGACCAAGGCCGGGAGGTGGCCGTCATCCGCCACCGCTGGCT 60
Query 61 CCGACGGTGAGTAGTTTCAAGCCCAGAGCTCAATGGACTAACTCTGGATCTTCCATTTTC 120
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 61 CCGACAGTGAGTAGTTTCAAGCCGAGAGCTCAATGGACTAACTCCGGATCTTCCATTTTC 120
Query 121 CTCTACGTTAATCTTCCTGGGTTTTATAGGGATCAAATAGAAATAAAAAAGGATGAGAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTACGTTAATCTTCCTGGGTTTTATAGGGATCAAATAGAAATAAAAAAGGATGAGAGG 180
Query 181 ACAAGGACTGTCCAGATTCGAGGCCAGCGACCGCTCTCTGCTCAGACTAAGGCTCGTTTT 240
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACAAGGACTGTCCAGATTCAAGGCCAGCGACCGCTCTCTGCTCAGACTAAGGCTCGTTTC 240
Query 241 AATGAAACTTACCGTGTCCCAGATACCTGTGACATGACCAAATTGAGCACCTCCTTCTCA 300
| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTGAAGCTTACCGTGTCCCTGATACCTGTGACATGACCAAATTGAGCACCTCCTTCTCA 300
Query 301 CATGGACTCTTGACGATCGAGTTTCCAGCGATCGTGGAAGCTAA-AAAGCAGGAGAAAGC 359
|||||||||||||| |||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct 301 CATGGACTCTTGACCATCGAGTTTCCAGCAATCGTGGAAGCTAACAAA-CAGGAGAAAGC 359
Query 360 AGTTAAAGATCAGGGGAAGATTGGACAGAGTTCTAATCGGGAGAAAAGTGGAGGCCCTGG 419
||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct 360 AGTCCAAGATCAGGAGAAGATTGGACAGAGGTCTAATCAGGAGAAAAGTGGAGGGCCTGG 419
Query 420 TGCAAATGGGAGGAGCTTGGGACGAAAGAAACCTTCGGACGG-GGAGAAACAAGTGGGAA 478
| | |||||||| | |||||||||||||||| ||| ||| || |||||||||||||||||
Sbjct 420 TCCTAATGGGAGTACCTTGGGACGAAAGAAAGCTTTGGA-GGAGGAGAAACAAGTGGGAA 478
Query 479 CAAGTCAAGATACAGCTGCTCCAACGTTGAATGAAGAA-C-CC-AAAACGTATAAATCAG 535
|||||||||| | | | |||||||||||||||||||| | || ||||||||||||||||
Sbjct 479 CAAGTCAAGAGAAAACCACTCCAACGTTGAATGAAGAAGCACCCAAAACGTATAAATCAG 538
Query 536 TGGTTGAGGGGAAAAGAGCGGTGCCAACGGGCAGTCGAGAAAAGTCTGAAACGAAAGTAA 595
|||||||||| |||||||| |||||||||||||||| ||| ||||||||| ||||||| |
Sbjct 539 TGGTTGAGGGTAAAAGAGCAGTGCCAACGGGCAGTCAAGAGAAGTCTGAAGCGAAAGTTA 598
Query 596 AAGCGAGAGAAGCAATTCCTAGCTTAGTGGGCA-ACGAACCTGCAAAAGAAGAAAAGGTG 654
||||| |||| ||||| |||||||||| ||| | | |||| ||| |||||||| ||||||
Sbjct 599 AAGCGCGAGAGGCAATCCCTAGCTTAGGGGGAAGA-GAACGTGCGAAAGAAGAGAAGGTG 657
Query 655 GCCGAGAGAAAGGAGGCTGCTCAAATAGGTCAGCAAAAGATTGGACAAAAATTAAAGGAG 714
| |||||||||||||||||||| |||| |||||||||||| ||| | ||||| ||||||
Sbjct 658 GTTGAGAGAAAGGAGGCTGCTCACATAGTTCAGCAAAAGATAGGAGATAAATTGAAGGAG 717
Query 715 GAAGAGGCTAAAAGAACACCAACCCTTGGTGGTAGTTTAAAACCCAAGGTACAGGGGAAA 774
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 718 GAAGAGGCTAAAAGTACACCAACCCTTGGTGGTAGCTTAAAACCTAAGGTACAGGCAAAA 777
Query 775 GAGGAGAAATTAATTGAGAGAAAGAAAGATGATGATATAAGTCAGAATAAGTCTGGACAG 834
|| |||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 778 GAAGAGAAAGTAATTGAGAGAAAGAAAGATGATGATATAAGTCAGCTTAAGACTGGACAG 837
Query 835 AAGGTGAAGGAGAAAGAGATTAGCAGAACGCCGACCATTGATGCTGGAGTGGAACCCAAG 894
||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 838 AAGGTGAAGGAAAAAGAGATTAGCAGAACGCCGACCATAGATGCTAGAGTGGAATCCAAG 897
Query 895 GAACATGCTAAAGTTGTTGAGAAAAAGGAAGATGGTGAAATAGGTCAGAAGCTGAAAGAG 954
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 898 GAACATGCCAAAGTTGTTGAGAAAAAGGAAGATGGTGAAATAGGTCAGAAGCTGGA-G-G 955
Query 955 GAAGGAAGGATTAACTTAGGACAAAAGAAAGAAGAGAAAATTACTAAACCAGTTGTTGGT 1014
|| |||||||||||||| |||| |||||||||||| ||| |||| |||||||||||||||
Sbjct 956 GA-GGAAGGATTAACTTGGGACCAAAGAAAGAAGATAAATTTACAAAACCAGTTGTTGGT 1014
Query 1015 GATGAGGCAAGAAGAATAGAGATGAAAATTGCTCAGACAAACCAAGCAGAGCCTGAGATA 1074
|||||||||||||||||||||| ||| ||||||||| |||||||||||||||| || ||
Sbjct 1015 GATGAGGCAAGAAGAATAGAGAAGAATGTTGCTCAGAGAAACCAAGCAGAGCCTAAGCTA 1074
Query 1075 AAAACGAAAGAGGGAGATGAAAGAATCAAACTGGATGTTGATGATCGCTTGAGAAACAAG 1134
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1075 AAAACGAAAGAGGGAGATGAAAGAATCAAACTGGATGTTGATGATGGCGTGAGAAACAAG 1134
Query 1135 CAGGATGAGAAAAACGAGCCGGTTGGAGACATGGTTAGTGAAGGAGAGATTCAAGACAGA 1194
||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CAGGATGAGAATAATGAGATGGTTGGAGACATGGTTAGTGAAGGAGAGATTCAAGACAGA 1194
Query 1195 GAGAAGCAGAAGAAAATAAAAGAAGCTTGTTTAGCCAAAGATACAGGAGGTTTAAAGGAT 1254
| | |||||||||| ||| | |||||| ||||||||||||||| ||| | | ||||||||
Sbjct 1195 GTGGAGCAGAAGAAGATAGACGAAGCTGGTTTAGCCAAAGATAGAGGCGATCTAAAGGAT 1254
Query 1255 AATGCTGAAATCGTGGATTCAGAAACCGGTCCATTACTAGTCAAAG--G-ACAGAAGAAG 1311
||||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 1255 AATGCTGAAGTCGTGGAACCAGAAACCGGTCCATTACTAGTCAAAGAAGGACAGAAGAAG 1314
Query 1312 AGTGGCATAGATTCTCCTCTTGCAGTAGGAGGAAGAGGAATGGGTGAAGAAGAGAGTCGG 1371
|| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AGCGACATGGATCCTCCTCTTGCAGTAGGAGGAAGAGGAATGGGTGAAGAAGAGAGTCGG 1374
Query 1372 ACATATGACATATCTTTGGTGAATGTTGGTGCAGCAGCTCTTGTGATTATGGGGTTTGGC 1431
|||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1375 ACATATGACATACCTTTGGTGAATGTTGGTGTAGCTGCTCTTGTGATTATGGGGTTTGGT 1434
Query 1432 GCTTACGTCTTTGTACCACTTGTAAAATATTTCTCTTGA 1470
|||||||||||||||||||| |||||||||||||| |||
Sbjct 1435 GCTTACGTCTTTGTACCACTAGTAAAATATTTCTCCTGA 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72489586980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5