BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341207
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10710.1 | Symbols: RHS12 | root hair specific 12 | chr3:335... 2588 0.0
AT5G04960.1 | Symbols: | Plant invertase/pectin methylesterase... 405 7e-112
> AT3G10710.1 | Symbols: RHS12 | root hair specific 12 | chr3:3352289-3354237
FORWARD LENGTH=1686
Length=1686
Score = 2588 bits (1401), Expect = 0.0
Identities = 1596/1691 (94%), Gaps = 10/1691 (1%)
Strand=Plus/Plus
Query 1 ATGTCCTCCCCGTACGGCAAAGTCGACGAGCATGAACACGTAAGGCTCCAAGCTCGTCGT 60
|||||||| || ||||||||||||||||||| |||||| ||||||||| |||||||||||
Sbjct 1 ATGTCCTCTCCTTACGGCAAAGTCGACGAGCGTGAACATGTAAGGCTCGAAGCTCGTCGT 60
Query 61 AAGACGAGAAAGAACATCGCAATAATCGCTGTATCACTCGTCATTCTCGCCGGAATCGTG 120
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 61 AAGACGAGAAAGAACATCGCAATCATCGCTGTATCACTAGTCATTCTTGCCGGAATCGTG 120
Query 121 ATCGGAGCCGTGTTTGGAACCATGGCTCACAAGAAGTCATCAGAGACAGTGGAGACTAAT 180
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 ATCGGAGCTGTGTTTGGAACCATGGCTCACAAGAAGTCACCAGAGACAGTGGAGACTAAT 180
Query 181 AACAACGGAGACTCAATCTCCGTTTCCGTTAAAGCCGTTTGCGACGTTACGTTGCATAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACAACGGAGACTCAATCTCCGTTTCCGTTAAAGCCGTTTGCGACGTTACGTTGCATAAA 240
Query 241 GACAAATGCTTCGAAACCCTCGGATCAGCTCCAAACGCAAGCAGTCTTAATCCAGAAGAG 300
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GAAAAATGCTTCGAAACCCTCGGATCAGCTCCAAACGCAAGCAGTCTCAATCCAGAAGAG 300
Query 301 CTCTTCAAATACGCAGTCAAAATCACAATCACCGAAGTTTCAAAAGCTCTCAACGCTTTC 360
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 301 CTCTTCAGATACGCAGTCAAAATCACAATCGCCGAAGTTTCAAAAGCTATCAACGCTTTC 360
Query 361 TCCTCATCCTTAGGCGATGAAAAGAACAACATCACCATGAACGCTTGCGCTGAGCTTCTT 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTTCATCCTTAGGCGATGAAAAGAACAACATCACCATGAACGCTTGCGCTGAGCTTCTT 420
Query 421 GACCTAACGATAGATAACCTCAACAACACGTTAACGTCATCAGCAAACGGTGGTGTCACG 480
||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 421 GACCTAACGATAGATAACCTCAACAACACGTTAACCTCATCATCAAACGGTGATGTCACG 480
Query 481 GTTCCTGAGCTAGTTGATGACCTACGTACATGGCTGAGCTCAGCCGAGACGTATCAA-GA 539
|||||||||||||| ||||| || |||||||||||||| ||||||| |||||||||| |
Sbjct 481 GTTCCTGAGCTAGTCGATGATCTCCGTACATGGCTGAGTTCAGCCGGGACGTATCAACGG 540
Query 540 AACGTGCGTGGAAACGTTGGCTCCAGATATGAAGCCGTTCGGAGAAAGTCATCTCAAGAA 599
| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 541 A-CGTGCGTGGAAACGTTGGCTCCAGATATGAGGCCGTTCGGCGAAAGTCATCTCAAGAA 599
Query 600 CTCAACGGAGCTGACGAGTAACGCACTAGCGATCATCACATGGCTCGGAAAGATCGCTGA 659
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 CTCAACGGAGTTGACGAGTAACGCACTAGCGATCATCACATGGCTCGGGAAGATCGCTGA 659
Query 660 CTCGTTCAAACTCCGGAGGCGTTTGTTGACTACGGTTGACGTGGAGGTGGACGTCCATGC 719
||| ||||||||||||||||||||||| || || | ||||||||||||||| |||| ||
Sbjct 660 CTCTTTCAAACTCCGGAGGCGTTTGTTAACAACTGCAGACGTGGAGGTGGACTTCCACGC 719
Query 720 GGG-CAGGAGATTGTTGCAGAGCACGGATTTGAGGAAAGTGGCGGATATTGTGGTGGCTA 778
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 720 GGGTC-GGAGATTGTTGCAGAGCACGGATTTGAGGAAAGTGGCGGATATTGTGGTGGCGA 778
Query 779 AGGATGGTTCGGGGAAGTATAGAACGATAA-GTAGGGCTTTAGAGGATGTGCCTGAGAAG 837
|||||||||| ||||||||||||||||||| | ||||||||| | |||||||| ||||||
Sbjct 779 AGGATGGTTCAGGGAAGTATAGAACGATAAAG-AGGGCTTTACAAGATGTGCCAGAGAAG 837
Query 838 AGTGAGAAGAGGACGATTATATATGTGAAGAAAGGAGTTTATTTTGAGAATGTGAAGGTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGTGAGAAGAGGACGATTATATATGTGAAGAAAGGAGTTTATTTTGAGAATGTGAAGGTG 897
Query 898 GAGAAAAAGATGTGGAATGTTGTTGTGGTTGGAGATGGAGAGAGCAAGAGTATTGTCTCT 957
||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 898 GAGAAGAAGATGTGGAATGTTATTGTGGTTGGAGATGGCGAGAGCAAGAGTATTGTCTCT 957
Query 958 GGCAGACTTAATGTCATCGATGGAACTCCCACTTTTAAGACTGCCACATTCGCTGTGTTC 1017
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 958 GGTAGACTTAATGTCATCGATGGAACTCCCACTTTTAAGACCGCCACATTCGCTGTGTTT 1017
Query 1018 GGAAAAGGGTTTATGGCAAGAGACATGGGCTTCATCAACACAGCTGGTCCATCCAAACAC 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GGAAAAGGGTTTATGGCAAGAGACATGGGCTTCATCAACACAGCTGGTCCATCCAAACAT 1077
Query 1078 CAAGCCGTAGCGCTAATGGTAAGCGCGGATCTCGCCGCCTTTTACCGTTGTACAATGAAC 1137
||||| || || |||||||||||||| |||||| | || ||||||||||| || ||||||
Sbjct 1078 CAAGCTGTTGCTCTAATGGTAAGCGCAGATCTCACAGCATTTTACCGTTGCACGATGAAC 1137
Query 1138 GCATACCAAGACACGCTTTACGTGCACGCTCAACGCCAATTCTACCGTGACTGCACCATT 1197
||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||
Sbjct 1138 GCATACCAAGACACGCTTTACGTTCATGCACAACGCCAATTCTACCGTGAATGCACCATT 1197
Query 1198 ATGGGAACAGTCGATTTCATCTTCGGTAACTCAGCTTCAGTTCTCCAAAACTGCCGGATT 1257
|| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1198 ATCGGAACAGTAGATTTCATCTTTGGTAACTCAGCTTCAGTTCTCCAAAGCTGCCGGATT 1257
Query 1258 CTCCCTCGCCGACCAATGAAAGGACAACAAAACACAATCACGGCTCAAGGACGTACTGAT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTCCCTCGCCGACCAATGAAAGGACAACAAAACACAATCACGGCTCAAGGACGTACTGAT 1317
Query 1318 CCGAACATGAACACAGGAATCTCAATTCACCGTTGTAACATCTCTCCGCTCGGTGACCTA 1377
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1318 CCGAACATGAACACAGGAATCTCGATTCACCGTTGTAACATCTCTCCACTCGGTGACCTA 1377
Query 1378 ACCGATGTTAAGACGTTTTTAGGTCGACCATGGAAGAATTTCTCGACGACAGTGATAATG 1437
|||||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 1378 ACCGATGTTATGACGTTTCTAGGTCGACCATGGAAGAATTTCTCGACGACGGTTATAATG 1437
Query 1438 GACTCGTATTTGCATGGGTTTGTTGACCGGAAAGGTTGGTTACCGTGGACCGGAGATTCG 1497
||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1438 GACTCGTATTTGCATGGTTTTATTGACCGGAAAGGCTGGTTACCGTGGACCGGAGATTCT 1497
Query 1498 GCGCCGGATACTATATTTTACGGTGAGTATAAGAATACCGG-CGCTGGTGCGTCGACAAA 1556
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||
Sbjct 1498 GCGCCGGATACTATATTTTACGGTGAGTATAAGAATACCGGTC-CTGGTGCATCGACGAA 1556
Query 1557 GAATAGAGTTAAGTGGAAGGGATTGCGGTTTCTTTA-TACGAAGGAAGCGAATAGGTTTA 1615
|||||| |||||||||||||| ||| |||||||| | |||||||||||||||||||||||
Sbjct 1557 GAATAGGGTTAAGTGGAAGGGTTTGAGGTTTCTT-AGTACGAAGGAAGCGAATAGGTTTA 1615
Query 1616 CCGTGAAAGCTTTCATCGACGGAGGAAGATGGCTTCCGGCCACGAAAGTGCCGTTCAGGT 1675
| |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1616 CGGTGAAACCTTTCATCGACGGTGGAAGATGGCTTCCGGCGACGAAAGTGCCGTTCAGGT 1675
Query 1676 CCGGTCTCTGA 1686
|||||||||||
Sbjct 1676 CCGGTCTCTGA 1686
> AT5G04960.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:1461907-1463969 FORWARD LENGTH=1933
Length=1933
Score = 405 bits (219), Expect = 7e-112
Identities = 706/936 (75%), Gaps = 53/936 (6%)
Strand=Plus/Plus
Query 765 TATTGTGGTGGCTAAGGATGGTTCGGGGAAGTATAGAACGATAAGTAG-GGCTTTAGAGG 823
||| ||||||||||| || || |||||||| ||| | ||||| || | |||||||| ||
Sbjct 849 TATCGTGGTGGCTAAAGACGGGTCGGGGAAATATCGGACGATTGGT-GAGGCTTTAGCGG 907
Query 824 ATGTGCCTGAGAAGAGTGAGAAGA-GGACGATTATATATGTGAAGAAAGGAGTTTATTTT 882
| ||| ||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 908 AAGTGGAGGAGAAGAATGAGAA-ACCTACGATTATATATGTGAAGAAAGGAGTTTATTTA 966
Query 883 GAGAATGTGAAGGTGGAGAAAAAGATGTGGAATGTTGTTG-TGGTTGGAGATGGAGAGAG 941
|||||||| | ||| ||||| | || ||||||||||| | |||||||||||||| | ||
Sbjct 967 GAGAATGTTAGGGTTGAGAAGACGAAATGGAATGTTGT-GATGGTTGGAGATGGACAAAG 1025
Query 942 CAAGAGTATTGTCTCTGGCAG-ACTTAA-TGTCATCGATGGAACTCCCACTTTT-AAGAC 998
|||| ||| ||||||| | | ||| || | ||||||||||||| |||||||| || ||
Sbjct 1026 TAAGACTATCGTCTCTG-CTGGACTCAACT-TCATCGATGGAACCCCCACTTTCGAA-AC 1082
Query 999 TGCCACATTCGCTGTGTTCGGAAAAGGGTTTATGGCAAGAGACATGGGCTTCATCAACAC 1058
|||||||| |||||||| ||||| ||||| ||||| || |||||||||||||| |||||
Sbjct 1083 CGCCACATTTGCTGTGTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAACAC 1142
Query 1059 AGCTGGTCCATCCAAACACCAAGCCGTAGCGCTAATGGTAAGCGCGGATCTCGCC-GCCT 1117
|||||||||| | || || ||||||||||| |||||||||||||| || || | | |
Sbjct 1143 AGCTGGTCCAGCTAAGCATCAAGCCGTAGCTCTAATGGTAAGCGCAGA-CTTATCTGTGT 1201
Query 1118 TTTACC-GTTGTACAATGAACGCATACCAAGACACGCTTTACG-TGCACGCTCAACGCCA 1175
| ||| || | || ||| |||| | |||||| || | |||| | || || ||||| ||
Sbjct 1202 TCTACAAGT-GCACCATGGACGCTTTCCAAGATACAATGTACGCT-CATGCACAACGTCA 1259
Query 1176 ATTCTACCGTGACTGCACCATTATGGGAACAGTCGATTTCATCTTCGGTAACTCAGC--T 1233
|| |||||||| || || | ||||| || ||||| || || || ||| | || |
Sbjct 1260 GTTTTACCGTGATTGTGTTATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGT 1319
Query 1234 TCAGT-TCTCCAAAACTGCCG-GATTCTC-CCTCGCCGACCAATGAAAGGACAACAAAAC 1290
| || | ||||||| ||| | ||| || ||||| || || |||||||| || || ||
Sbjct 1320 T--GTAT-TCCAAAAGTGC-GAGAT-CTTGCCTCGTCGTCCTATGAAAGGCCAGCAGAAT 1374
Query 1291 ACAATCACGGCTCAAGGACGTACTGATCCGAAC-ATGAACACAGGAATCTCAATTCACCG 1349
||||| || ||||| || || | ||||||||| | ||||||||||| || || |||
Sbjct 1375 ACAATAACCGCTCAGGGCCGGAAAGATCCGAACCAA-AACACAGGAATTTCTATCCACAA 1433
Query 1350 TTGTAAC-ATCTCTCCGCTCGG-TGACCTAACCGATGTT-AAGACGTTTTTAGGTCGACC 1406
||||| | ||| || | || | || |||||||| | || || || |||| || ||
Sbjct 1434 TTGTA-CTATCAAGCCTTT-GGATAACTTAACCGATATCCAA-ACATTCCTAGGCCGGCC 1490
Query 1407 ATGGAAGAATTTCTCGACGACAGTGATAATGGACTCGTATT-TGCATGGGTTTGTTGACC 1465
|||||| ||||||| || || || || ||| | |||| | || | || | |||
Sbjct 1491 TTGGAAGGATTTCTCTACAACGGTTATCATGAAGTCGT-TCATGGACAAATTCATCAACC 1549
Query 1466 GGAAAGGTTGGTTACCGTGGACCGGAGATTCGGCGCCGGATACTATATTTTACGGTGAGT 1525
|||||| |||||||||||||| |||||| | ||||| || || || ||||||| ||||
Sbjct 1550 CGAAAGGGTGGTTACCGTGGACAGGAGATACCGCGCCAGACACGATCTTTTACGCCGAGT 1609
Query 1526 A-TAAGAATACCGGCGCT-GGTGCGTCGACAAAGAATAGAGTTAAGTGG-AAGGGATTGC 1582
| | | ||| |||| || || || ||||| ||||| | ||||||||| ||||| |||
Sbjct 1610 ACTTA-AATTCCGG-GCCAGGAGCATCGACCAAGAACCGGGTTAAGTGGCAAGGG-TTGA 1666
Query 1583 GGTT-TCTTTATAC---GAAGGAAGCGAATAGGTTTACCGTGAAAGCTTTCATCGACGG- 1637
| |||||| || ||||||||| |||| |||||| |||||| |||| || |||||
Sbjct 1667 AGACGTCTTTA-ACAAAGAAGGAAGCAAATAAGTTTACGGTGAAACCTTTTATAGACGGC 1725
Query 1638 AGGAAGATGGCTT-CCGGCCACGAAAGTGCCGTTCA 1672
| || ||| || ||||| || ||||| || ||||
Sbjct 1726 AATAAC-TGG-TTGCCGGCTACCAAAGTTCCCTTCA 1759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5