BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341215
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10790.1 | Symbols: | F-box associated ubiquitination effec... 898 0.0
> AT3G10790.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:3377410-3378369 FORWARD LENGTH=960
Length=960
Score = 898 bits (486), Expect = 0.0
Identities = 815/964 (85%), Gaps = 62/964 (6%)
Strand=Plus/Plus
Query 13 AAGGTGAAAAAG-ACAATCGGTAACACTTCAAAACGTGTTACAAGGTCCCAAACTTACCC 71
|||| | ||||| || ||| ||||||||| |||| ||||||||||||||||||| ||||
Sbjct 13 AAGG-GGAAAAGAACCATCAGTAACACTTGGAAACTTGTTACAAGGTCCCAAACTGACCC 71
Query 72 CTTCGAAGGAATAATGCCTCTGAATCTGAAAGAGGAGATTCTCATGAAATTGAAGGCCAA 131
||| ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 72 CTTTGAAGG---AATGCCTCTGCATCTGAAAGAGAAGATTCTCATGAAATTGAAGGCCAA 128
Query 132 AACCATATCGAAGCTGATCCTCCTTTCGAAGTCATGGTCATCGATAGTCCTTAACAAAGA 191
|| |||||||| | | ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 129 AATCATATCGACGTTCATCCTCCTTTCCAAGTCCTGGTCATCGATAGTCCTTAACAAAGA 188
Query 192 TTTCACCAACA--TA--T-A-CCT---G-AC--TCAATCTTTGGCTCGACCACGTCTTCT 239
||||||||||| || | | | | | | |||||||| |||||||||||||||
Sbjct 189 TTTCACCAACATGTATTTGATAATAAAGTTCTTTGAATCTTTGAATCGACCACGTCTTCT 248
Query 240 TTTCTCAATCTACAATCTTGACATAGATGTGCATTTCTTCCACTCTTGCTCTCAAGAGGA 299
||| || || || ||| || ||| || |||| ||||||||||||||||||| ||||||
Sbjct 249 TTTGGCAGTCGACGATCGAGAAATAAATATGCAGTTCTTCCACTCTTGCTCTCGAGAGGA 308
Query 300 TCCATCTTCTGATCATCAAAGGGTTAGG-TGTTACCCTGATTCGAATTCGGC-TAGCTGG 357
|||||||||||||||||||| |||| || ||||||||||||||| | || || || ||||
Sbjct 309 TCCATCTTCTGATCATCAAACGGTT-GGCTGTTACCCTGATTCGTA-TCCGCGTATCTGG 366
Query 358 TATGACTATTCTCCACCTGTCCGTGGCTTGATCTGCTGTCTAGAA-AATCTATATACTAA 416
||||||| |||||||||||| ||||||||||||||||||||| || || | | ||||||
Sbjct 367 TATGACTTTTCTCCACCTGTTCGTGGCTTGATCTGCTGTCTA-AACAA--T-TCTACTAA 422
Query 417 AGTGGTAATTGGAAATCCTACTACTTGTCAATTTGTAACTTTACCTAGAGTCAGAACTAA 476
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 423 AGTGGTAATTGGAAATCCTACTACTTGTCAATTTGAAACTTTACCGAGAGTCAGAAC--- 479
Query 477 GAAGAAAGACATATTCCCAGACATATTCCCCTT-TTTGGGATATGATCCTGTTAAGGATG 535
|| | |||| || ||| ||||| ||||| ||| ||||| |||| |||||||||||
Sbjct 480 ----CAA-A-ATATACCAAGAAATATTTCCCTTCTTT-GGATACGATCATGTTAAGGATG 532
Query 536 AATACAAAGTCTTGTGCATGACGATA---G--CAG-CCAATCA-TA-A--AGGAAATGTT 585
|||||||||||||||||||||||||| | || | || | || | ||||||| ||
Sbjct 533 AATACAAAGTCTTGTGCATGACGATATCGGATGAGTACTAT-AGTAGATCAGGAAATATT 591
Query 586 GTGTCCAAGGAACATCAAGTTTTCACTCTAGGAGGTAAAAAGAAGAAATGGAGAATGATC 645
||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 592 GTGTCCAAGGAGCATAAAGTTTTCACTCTAGGATGTAAACAGAAGAAATGGAGAATGATC 651
Query 646 GATTGTGA-GATTAATCATTATCTTCCTCCTAGAACTAAAGGGATATGTAGCAATGGGGT 704
|| ||| | |||||||||||||||| ||||| ||||| |||| |||| ||||||||||||
Sbjct 652 GAATGT-ACGATTAATCATTATCTTACTCCTGGAACTCAAGGAATATTTAGCAATGGGGT 710
Query 705 TGTGTATTATC-TAGCTATGGTCAACCATGTTCAGTCTCTAATGTGCTTTGATGTGGGGT 763
| | ||||| | | |||| |||||| ||| |||||| ||||||||||||| ||||||||
Sbjct 711 TATCTATTA-CTTCGCTAGGGTCAATGATGATCAGTCGCTAATGTGCTTTGTTGTGGGGT 769
Query 764 CTGAAAAGTTTAGTGTCGTTAAGTTACCGGGGAAGGTCG--GAA-TTCTAGCGAAGTACG 820
|||||||||||||||||||| |||||||| || || || ||| |||||||||| ||||
Sbjct 770 CTGAAAAGTTTAGTGTCGTTGAGTTACCGAGGCCGGCCGTCGAAGTTCTAGCGAACTACG 829
Query 821 GCGAAAAGATAGCTGTAACGAATTTGTTATTTGACT-GT-AT-A-CGACTTGACGTTTGG 876
|||||||||||||||||||||||||||||| || || || || | ||||| || |||
Sbjct 830 GCGAAAAGATAGCTGTAACGAATTTGTTATATG-CTAGTAATGATAGACTTTTTGTATGG 888
Query 877 ATTCTAGAAGATGCCAGCAAACAAGAATGGTCAAA-TATTTATGTCTTGGTTCCTTCTTG 935
||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 889 ATTCTAGAAGATGCCAGCAAACAAGAATGGTCAAACT-TTTGTGTCTTGGTTCCTTCTTG 947
Query 936 TGTA 939
|||
Sbjct 948 GGTA 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5