BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg341215 Length=1158 Score E Sequences producing significant alignments: (Bits) Value AT3G10790.1 | Symbols: | F-box associated ubiquitination effec... 898 0.0 > AT3G10790.1 | Symbols: | F-box associated ubiquitination effector family protein | chr3:3377410-3378369 FORWARD LENGTH=960 Length=960 Score = 898 bits (486), Expect = 0.0 Identities = 815/964 (85%), Gaps = 62/964 (6%) Strand=Plus/Plus Query 13 AAGGTGAAAAAG-ACAATCGGTAACACTTCAAAACGTGTTACAAGGTCCCAAACTTACCC 71 |||| | ||||| || ||| ||||||||| |||| ||||||||||||||||||| |||| Sbjct 13 AAGG-GGAAAAGAACCATCAGTAACACTTGGAAACTTGTTACAAGGTCCCAAACTGACCC 71 Query 72 CTTCGAAGGAATAATGCCTCTGAATCTGAAAGAGGAGATTCTCATGAAATTGAAGGCCAA 131 ||| ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 72 CTTTGAAGG---AATGCCTCTGCATCTGAAAGAGAAGATTCTCATGAAATTGAAGGCCAA 128 Query 132 AACCATATCGAAGCTGATCCTCCTTTCGAAGTCATGGTCATCGATAGTCCTTAACAAAGA 191 || |||||||| | | ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 129 AATCATATCGACGTTCATCCTCCTTTCCAAGTCCTGGTCATCGATAGTCCTTAACAAAGA 188 Query 192 TTTCACCAACA--TA--T-A-CCT---G-AC--TCAATCTTTGGCTCGACCACGTCTTCT 239 ||||||||||| || | | | | | | |||||||| ||||||||||||||| Sbjct 189 TTTCACCAACATGTATTTGATAATAAAGTTCTTTGAATCTTTGAATCGACCACGTCTTCT 248 Query 240 TTTCTCAATCTACAATCTTGACATAGATGTGCATTTCTTCCACTCTTGCTCTCAAGAGGA 299 ||| || || || ||| || ||| || |||| ||||||||||||||||||| |||||| Sbjct 249 TTTGGCAGTCGACGATCGAGAAATAAATATGCAGTTCTTCCACTCTTGCTCTCGAGAGGA 308 Query 300 TCCATCTTCTGATCATCAAAGGGTTAGG-TGTTACCCTGATTCGAATTCGGC-TAGCTGG 357 |||||||||||||||||||| |||| || ||||||||||||||| | || || || |||| Sbjct 309 TCCATCTTCTGATCATCAAACGGTT-GGCTGTTACCCTGATTCGTA-TCCGCGTATCTGG 366 Query 358 TATGACTATTCTCCACCTGTCCGTGGCTTGATCTGCTGTCTAGAA-AATCTATATACTAA 416 ||||||| |||||||||||| ||||||||||||||||||||| || || | | |||||| Sbjct 367 TATGACTTTTCTCCACCTGTTCGTGGCTTGATCTGCTGTCTA-AACAA--T-TCTACTAA 422 Query 417 AGTGGTAATTGGAAATCCTACTACTTGTCAATTTGTAACTTTACCTAGAGTCAGAACTAA 476 ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 423 AGTGGTAATTGGAAATCCTACTACTTGTCAATTTGAAACTTTACCGAGAGTCAGAAC--- 479 Query 477 GAAGAAAGACATATTCCCAGACATATTCCCCTT-TTTGGGATATGATCCTGTTAAGGATG 535 || | |||| || ||| ||||| ||||| ||| ||||| |||| ||||||||||| Sbjct 480 ----CAA-A-ATATACCAAGAAATATTTCCCTTCTTT-GGATACGATCATGTTAAGGATG 532 Query 536 AATACAAAGTCTTGTGCATGACGATA---G--CAG-CCAATCA-TA-A--AGGAAATGTT 585 |||||||||||||||||||||||||| | || | || | || | ||||||| || Sbjct 533 AATACAAAGTCTTGTGCATGACGATATCGGATGAGTACTAT-AGTAGATCAGGAAATATT 591 Query 586 GTGTCCAAGGAACATCAAGTTTTCACTCTAGGAGGTAAAAAGAAGAAATGGAGAATGATC 645 ||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 592 GTGTCCAAGGAGCATAAAGTTTTCACTCTAGGATGTAAACAGAAGAAATGGAGAATGATC 651 Query 646 GATTGTGA-GATTAATCATTATCTTCCTCCTAGAACTAAAGGGATATGTAGCAATGGGGT 704 || ||| | |||||||||||||||| ||||| ||||| |||| |||| |||||||||||| Sbjct 652 GAATGT-ACGATTAATCATTATCTTACTCCTGGAACTCAAGGAATATTTAGCAATGGGGT 710 Query 705 TGTGTATTATC-TAGCTATGGTCAACCATGTTCAGTCTCTAATGTGCTTTGATGTGGGGT 763 | | ||||| | | |||| |||||| ||| |||||| ||||||||||||| |||||||| Sbjct 711 TATCTATTA-CTTCGCTAGGGTCAATGATGATCAGTCGCTAATGTGCTTTGTTGTGGGGT 769 Query 764 CTGAAAAGTTTAGTGTCGTTAAGTTACCGGGGAAGGTCG--GAA-TTCTAGCGAAGTACG 820 |||||||||||||||||||| |||||||| || || || ||| |||||||||| |||| Sbjct 770 CTGAAAAGTTTAGTGTCGTTGAGTTACCGAGGCCGGCCGTCGAAGTTCTAGCGAACTACG 829 Query 821 GCGAAAAGATAGCTGTAACGAATTTGTTATTTGACT-GT-AT-A-CGACTTGACGTTTGG 876 |||||||||||||||||||||||||||||| || || || || | ||||| || ||| Sbjct 830 GCGAAAAGATAGCTGTAACGAATTTGTTATATG-CTAGTAATGATAGACTTTTTGTATGG 888 Query 877 ATTCTAGAAGATGCCAGCAAACAAGAATGGTCAAA-TATTTATGTCTTGGTTCCTTCTTG 935 ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| Sbjct 889 ATTCTAGAAGATGCCAGCAAACAAGAATGGTCAAACT-TTTGTGTCTTGGTTCCTTCTTG 947 Query 936 TGTA 939 ||| Sbjct 948 GGTA 951 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56827016940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5