BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341221
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1441 0.0
> AT3G10880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G05180.1);
Has 15699 Blast hits to 11378 proteins in 1134 species: Archae
- 391; Bacteria - 2054; Metazoa - 6851; Fungi - 1354; Plants
- 1096; Viruses - 119; Other Eukaryotes - 3834 (source:
NCBI BLink). | chr3:3405815-3407434 FORWARD LENGTH=1415
Length=1415
Score = 1441 bits (780), Expect = 0.0
Identities = 944/1023 (92%), Gaps = 12/1023 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTAATCACAGAAACAGAATCAGAGATTGTTGCTGATTCCTCCTTGTGGCTGCAT 60
||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||
Sbjct 153 ATGGATTTAATCACAGAAACAGAATCAGAGAATGTTGATGATTCTTCCTTGTGGCTCCAT 212
Query 61 AATTCTAAATCATTAGCAGAAATATTAACAGAGATAAATCAGAATGTTCAA-AGAATGCT 119
|||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 213 AATTCTAAGTCATTAGCAGACATATTAACAGAGATAAATCAGAATGTTCAACA-AATGCT 271
Query 120 AAGAATGATTGAAGATAGTGAAGAACCTGAGTCAACGGAGAAATTTCTGTGCTTATATCA 179
||||||||||||||||| | | |||| |||||||||||||||||||| | |||||||||
Sbjct 272 AAGAATGATTGAAGATA--GCA-AACCCGAGTCAACGGAGAAATTTCTTTACTTATATCA 328
Query 180 GTCTCTCGGTGAAACTTACAATGATTTGAACCAGGAGCTCCTCAACGGCCTTCTCAAACT 239
||| || |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 329 GTCGCTTGGTGAAACTTACAACGACTTGAACCAGGAGCTCCTCAACGGCCTTCTCAAACT 388
Query 240 GCCATGTTCCCTTGTAACTTCAATGGGGGCATTGAGCTCCTTTAAGCCTGATATGTCTCC 299
||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||||||
Sbjct 389 GCCATGTTCTCTTGTAACTTCAATGGGTGCATTGAGCACCTTTAAGCCTGATAAGTCTCC 448
Query 300 TGATTTGGAGTC---AGGAACATCTTACTCATCACTGAAGCACCAACTGGTCTCAACAAC 356
|||||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||
Sbjct 449 TGATTTGGAGTCAGGAGGAACCTCTTACTCATCTCTGAATCACCAAGTGGTCTCAACAAC 508
Query 357 GAGTAGCGAAAAGTCGCAGAGCTTGAAACTACATGGTGAGGTTGAGAAGAACGACTCTGC 416
||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||
Sbjct 509 GAGTAGCGAAAAGTCGCAGAGCTTGAAACTAAATGATGAGGTTGAGAAGAAAGACTCTGC 568
Query 417 ATTTTTGCTTGCTGATATGTTTTGTGCCGAGCTTGAAACTGCACGGAGGGAATTAGAAGC 476
||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 569 ATTTTTGCTTGCTGATATGTTTTGTGCTGAGCTTGAAACTGCACGGAGAGAACTAGAAGC 628
Query 477 AAGAAACATAGACATTGAAACTGAGAAAAGACATGTGCTTGACTTAGAAAGTAAGCTATC 536
|||||||||| |||||||||||||||||| ||||| |||||||||| |||||||||||
Sbjct 629 TAGAAACATAGCCATTGAAACTGAGAAAAGGTATGTGGTTGACTTAGAGAGTAAGCTATC 688
Query 537 AGATTCAAG-TCACAAGATTGAGAATTTGGAAAGCGAGCTCGACGAGGTTAAAGAGTGTT 595
|||||| | | ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 689 AGATTC-TGTTTACAAGATTGAGAAATTAGAAAGCGAGCTCGACGAGGTTAAAGAGTGTT 747
Query 596 TAGGTGTGTCAGAAGCCGAAGTTTCAAAGCTAATGGAAATGTTGAGTGGATGCAAGA-CA 654
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||| |
Sbjct 748 TAGGTGTGTCAGAAGCAGAGGTTTCAAAGCTAATGGAAATGTTGAGTGAATGCAAGAAC- 806
Query 655 GAGAAAGCGAAACCGCAGACCGATAATGCTGATGACTTGTTAGATAGCCTGAGAACAGAG 714
|||||| |||||| |||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 807 GAGAAATCGAAACTGCAGACCGATAATGCTGATGACTTGTTAGATAGCCTAAGAGCAGAG 866
Query 715 TTGAGATCAAGAGAAATACAAATTGAGCAAATGGAGGAGTATTTGAACCAGGTGTTGTGT 774
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 867 TTGAGATCAAGAGAAATCCAGATTGAGCAAATGGAGGAGTATTTGAACCAGGTTTTGTGT 926
Query 775 TTTAAAGAAACTGAGATTATAGCTGAGTCAGGAACCGACAAGAATGTTGTGGAAGAACTG 834
|||| ||||||||||||| | ||||||||| ||| ||||||||| ||||||||||||||
Sbjct 927 CTTAATGAAACTGAGATTAAATCTGAGTCAGAAACTGACAAGAATATTGTGGAAGAACTG 986
Query 835 AGAGCTAGAGTTGAAGTGCTGGAGAAACAAGTGGAGTTGCAGAGGAATGTTATAACAGAA 894
||||| | |||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 987 AGAGCCAAAGTTGAAGTGTTGGAGAAACAAGTGGAGTTGCAGAGAAATGTGATAACAGAA 1046
Query 895 CGAGAGGAAGAGAAAAGAGAGGCTATAAGACAACTCTGTTTCTCTCTGGATCATTACATG 954
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1047 CGAGAGGAGGAGAAAAGAGAGGCTATAAGACAGCTCTGTTTCTCTCTGGATCATTACATG 1106
Query 955 AACAGATATTTAGAGCTTGTAAGATCACTTTCTGACAACAAAAAGGTATGCCTTGTTAAG 1014
||| ||||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 1107 AACTGATATTTGGAGCTTGTAAGATCACTTTCAGACAAGAAAAAGGTATCCCTTGTTAAG 1166
Query 1015 TAA 1017
|||
Sbjct 1167 TAA 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5