BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341262
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05980.1 | Symbols: ATDFB, DFB, FPGS1 | DHFS-FPGS homolog B ... 255 5e-67
> AT5G05980.1 | Symbols: ATDFB, DFB, FPGS1 | DHFS-FPGS homolog
B | chr5:1799490-1804492 REVERSE LENGTH=2015
Length=2015
Score = 255 bits (138), Expect = 5e-67
Identities = 203/234 (87%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 198 GGTAGATGTTGCTATCTTGGAGGTGGGCCTAGGTGGGAGGATTGATTTCACCAATGTGGT 257
|||||||| |||||| |||||||| || ||||||| | | ||||| |||||||| |||
Sbjct 675 GGTAGATGCTGCTATATTGGAGGTTGGATTAGGTGGAAAGTTTGATGCCACCAATGCGGT 734
Query 258 TAAGAAACCTGTGGTATGCGGGT-TTTCATCTCTTGGCTATGACCACATGGAAATTCTAG 316
| |||||||||||||||| ||| |||| || || || ||||||||||||||||||||||
Sbjct 735 TCAGAAACCTGTGGTATG-TGGTATTTCTTCACTCGGATATGACCACATGGAAATTCTAG 793
Query 317 GAGATACGCTCGCG-AAAATTGCCGGTGAGAAGGCAGGAATTTTCAAGCTTGGAGTTCCA 375
| ||||| || | | |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 794 GTGATACACTTG-GAAAAATTGCTGGTGAGAAGGCTGGAATTTTCAAGCTTGGAGTTCCA 852
Query 376 GCTTTCACAGTGCCCCAAC-TCAATGAAGCAATGTGTGTCCTTGAAGAGAAAGC 428
||||||||||||||||||| | | |||||| ||| |||||||||||||||||||
Sbjct 853 GCTTTCACAGTGCCCCAACCTGA-TGAAGCCATGCGTGTCCTTGAAGAGAAAGC 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5