BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341299
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11773.2 | Symbols: | Thioredoxin superfamily protein | chr... 595 1e-169
> AT3G11773.2 | Symbols: | Thioredoxin superfamily protein | chr3:3722892-3723733
REVERSE LENGTH=774
Length=774
Score = 595 bits (322), Expect = 1e-169
Identities = 532/627 (85%), Gaps = 39/627 (6%)
Strand=Plus/Plus
Query 1 ATGAAGGATGTGAAGGAGAGAATGGTGAAGAAACTTAAGCTTATAAAATCTCTTGGGAAC 60
|||| |||| |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 75 ATGATGGATATGAAGGAGAGAATGGTGAAGAAACTTAAGCTTATTACATCTCTTGGGAAC 134
Query 61 TTGAAGCAGGCGATAGCTCTCCACAAAAGCAATCTTGATCGCACAATCTTTCATCAAATA 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 135 TTGAAGCAGGCGATAGCTCTCCACAAAAGCAATCTTGATCACACAATCTTTCATCAAATA 194
Query 121 GATGAGAAAGAGTGTCTTACGCCAACAACACTTGAG-TCTTCTGAAGA-ACAACAACTTC 178
|||||||||||||||||||||||||| ||| ||||| | |||||| || | ||| |||||
Sbjct 195 GATGAGAAAGAGTGTCTTACGCCAACGACAATTGAGGT-TTCTGAGGATA-AACGACTTC 252
Query 179 AACAGAATCTTGAAGAGCCTTTGTCGGAGTTTAAAGAGAAATGTGTAGCTGGAGGAG-AA 237
||||||||||||| |||| ||||| || ||| ||||||||||||||||||| || | ||
Sbjct 253 AACAGAATCTTGATGAGCTTTTGTGGGCTTTTGAAGAGAAATGTGTAGCTGGTGG-GCAA 311
Query 238 GATTCTGTTGTCTTCTACACGACAAGTC-TGCGAG-CAGTGAGAAAGACTTTCGAAGATT 295
|||||||||| ||||| ||| ||||| | | | | | | ||||||| || | ||
Sbjct 312 GATTCTGTTG-CTTCTTCACAACAAG-CAT-C-ATTCCG--AGAAAGA-----GATGTTT 360
Query 296 GCAGAAAAGTGAGATTCTTACTAGAGAATCATAAGATGTGGAAATTGATTGGGGAGAAAG 355
|| | || |||| | | || | || | | |||||||| |||| |||||||| |||
Sbjct 361 -CA-A----TG-GATTGTGAGTACA-AAGAAGA-GATGTGGAGATTGCTTGGGGAGCAAG 411
Query 356 TTACACCTCCTAGGCTTTTCGTAAAGTGTAAGTACATTGGTGGCGCAGACGAAGTGGTGG 415
|||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||||
Sbjct 412 TTACACCTCCTAGGCTCTTCATAAAGTGTAAGTACATTGGTGGAGCAGACGAGGTGGTGT 471
Query 416 CTCTGAACGAAACCGGGAAGCTCAAGATGCTTTTAG---------CATCAGCTAAGGCGC 466
|||| ||||||| || ||||||||||| |||| ||| ||||||||||| |||
Sbjct 472 CTCTTAACGAAAACGAGAAGCTCAAGAAGCTTCTAGAAGTGTTTTCATCAGCTAAGTCGC 531
Query 467 GGCAGTGTGA-ATGTTGCGAGGACGAACGGTTTTTTATATGTTGGAATTGCAATGGGAGG 525
|||||||||| |||| ||||| ||||| | ||||| ||||||| ||| ||||||||||||
Sbjct 532 GGCAGTGTGAGATGT-GCGAGAACGAAAGATTTTTGATATGTTCGAAATGCAATGGGAGG 590
Query 526 TCGAGAGTGGTAGCAGAGGATGAAATGTGGAAGAGATGCATAGAGTGTAATGAGAATGGT 585
|||||||| || |||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 591 TCGAGAGTTGTTGCAGAGCACGAAACCTGGAAGAGATGCATAGAGTGTAATGAGAATGGT 650
Query 586 CTTGTGAAATGCGCTCTTTGTACTTAA 612
||||||||||| |||||||||||||||
Sbjct 651 CTTGTGAAATGTGCTCTTTGTACTTAA 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5