BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341316
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11950.1 | Symbols: | TRAF-like superfamily protein | chr3:... 2538 0.0
> AT3G11950.1 | Symbols: | TRAF-like superfamily protein | chr3:3783111-3785660
REVERSE LENGTH=2010
Length=2010
Score = 2538 bits (1374), Expect = 0.0
Identities = 1614/1725 (94%), Gaps = 36/1725 (2%)
Strand=Plus/Plus
Query 1 ATGGATCCTCCTGTCTCGGATCTTGAGAGTATCGAAGATCAGAAAGAAGGAGGACCTTCC 60
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 130 ATGGATCCTCCTGTGTCGGATCTTGAGAGTATTGAAGATCAGAAAGAAGGAGGACCTTCC 189
Query 61 TTTCACTGTGATCTTTACGATACACAAGTAGTTCACAAGATTGCTCAGGTTTTTCTCCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTTCACTGTGATCTTTACGATACACAAGTAGTTCACAAGATTGCTCAGGTTTTTCTCCCT 249
Query 121 GGATTAGCCACTGCTTGTGTCGATAACACTACCGGCGATATCTTCAGGAGTCCTGGTTCT 180
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 250 GGTTTAGCCACTGCTTGTGTCGATAACACTACCGGAGATATCTTCAGGAGTCCTGGTTCT 309
Query 181 GTGGCTGCTGACATTCGAAAAGAAATGATTGAGTACTTGACTCGTAGAAGCGAAAGCTTT 240
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 310 GTTGCTGCTGACATTCGAAAAGAAATGATAGAGTACTTGACTCGTAGAAGCGAAACCTTT 369
Query 241 GTGGCTGAACACATTGTTCTTCAAGGTGGTTCTGAGATTGAAGCTTCTCATGATCCTTTT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 370 GTGGCTGAACACATTGTTCTTCAAGGAGGTTCTGAGATTGAAGCTTCTCATGATCCTTTT 429
Query 301 GACATTATATCTGATTTCATCGATGATTTCGCAACTTCTAAGCGGAATTTGTTCAGCCGG 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 430 GACATTATATCTGATTTCATCGATGATTTCGCCACTTCTAAGCGGAATTTGTTCAGCCGG 489
Query 361 GTTTCGGGTTGGATGCTTAGCGAAAGAAGGGAAGATAATATAGATGATTTCGCGCAAGAG 420
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 490 GTTTCGGGTTGGATGCTTAGCGAAAGGAGAGAAGATAATATCGATGATTTCGCGCAAGAG 549
Query 421 ATGGAGATAAGCGGCTTCTGGTTGACTGATCATAGAGAAGGGATCGCTCAGACTTTGCTT 480
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 550 ATGGAGATAAGCGGGTTTTGGTTGACTGATCATAGAGAAGGTATCGCTCAGACTTTGCTT 609
Query 481 AAAAACGTCGATTTTAAAAGCAGTGCTCATTGTGAGATGAAATTCCAAACCGAGGGAGAA 540
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 610 AAAAACGTTGATTTTAAAAGCAGTGCACATTGTGAGATGAAATTCCAAACCGAAGGAGAA 669
Query 541 CTCGCGGAGCATACCATGAGTTGTGGGTATAGAACCATGAACTGTGAGAACGAGGGTTGC 600
||||| ||||| |||||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct 670 CTCGCCGAGCACGCCATGAATTGTGGGTATAGAACAATGAACTGTGAGAATGAGGGTTGT 729
Query 601 ACTGCGGTCTTTTGCGCGAATCAGATGGAGAATCACGATTCAGTTTGCCCGTTCAAGAAT 660
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 730 ACTGCGGTGTTTTGTGCGAATCAGATGGAGAATCACGATTCTGTTTGCCCGTTCAAGA-T 788
Query 661 -ATTCCGTGTGAGCAGAACTGCTCAGAGAGTATCATGAGACGAGATATGGATAGGCATTG 719
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 789 CATTCCGTGTGAGCAGAACTGCTCAGAGAGTATCATGAGACGTGATATGGATAGGCATTG 848
Query 720 TATAACCGTATGTCCTATGAAACTTGTCAACTGTCCATTTCATGCTGTTGGTTGTCTATC 779
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 849 TATAACCGTATGTCCTATGAAACTTGTCAACTGTCCATTTCATTCTGTTGGTTGTCTCTC 908
Query 780 TGATGTGCATCAATGTGAGGCCCAACAACATCATTTGGATAATGTAAGCTCTCATTTGAT 839
|||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 909 TGATGTACATCAATGTGAGGTCCAACAACATCATTTGGATAATGTTAGCTCTCATTTGAT 968
Query 840 GTACATTCTTCGGAGCATCTACAAGGAAGCATCTCCGGATGATCTCAAACCCCGAACTGA 899
||||||||||||||| || |||||||||||||||| ||||||||||||||||||| ||||
Sbjct 969 GTACATTCTTCGGAGTATTTACAAGGAAGCATCTCTGGATGATCTCAAACCCCGAGCTGA 1028
Query 900 ACAGATACAGCAGTTGTCTAC-ACGGTTATCTGAAGCTCGTAATGCAAGATCACTAACGA 958
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 1029 ACAGATACAGCAGTTGTCTACTA-GGTTATCTGAAGCTCGTAATGCAAGATCACTAACAA 1087
Query 959 ATCTGGTCAAGGAAATTGATGGAAAGCTGGGGCCTTTAGAAATCAAACCAAAGATTGTTA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 ATCTGGTCAAGGAAATTGATGGAAAGCTGGGGCCTTTAGAAATCAAACCAAAGATTGTTA 1147
Query 1019 CTAACTTGGAGTCCGATAAACCTGAAAATACAGAAAAGGAAGCATTAGAAGAAGCTGAGA 1078
|| ||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1148 CTGACTCGGAATCCGATAAACCTGAAAATACAGAAAAGAAAGCCTTAGAAGAAGCTGAGA 1207
Query 1079 TCAAAGAAAAACCGGAAACAAGCAACTTAAAAGCTGGTACATTGGAGCAAACCGCG-GA- 1136
| ||||||||||| || || || ||||||||||||| ||||||||||||||||||| ||
Sbjct 1208 TTAAAGAAAAACCAGAGACGAGTAACTTAAAAGCTGTTACATTGGAGCAAACCGCGAGAG 1267
Query 1137 A-G------A---TAAAGTGGTTTCAAAAGAAGTAAATGATGCAATGGTGGAAGAAGCTG 1186
| | | |||| ||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 1268 AAGCTCCGGAAGATAAATTGGTTTCAAAAGAAGTAGATGCTGCAATGGTGAAAGAAGCTG 1327
Query 1187 CAAAGAAAGTTTCAGAAGCTGAGATAGCAGACAATGTTAATGAAGAAGGAGAATTAAAAG 1246
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1328 CAAAGAAAGTTTCAGAAGCTGAGATAGCAGACAATGTTAATGAAGAAGGCGAATTAAAAG 1387
Query 1247 CGCAGAAGCTTTTAGAATTAGGCGAGTTCATAAAAGAAGGAGACAACAACTCTGCAGATG 1306
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1388 CGCAGAAGCTTTTAGAAATAGGCGAGTTCATCAAAGAAGGAGACAACAACTCTGCAGATG 1447
Query 1307 ATTTATCAGAGAGAACCGAAACCAAAGCTCCAGAAGTTGTGGTCATGGATGAGGATAGAG 1366
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1448 ATTTATCAGAGAGAACCGAAACCAAAGCTCCAGAAGTTGTGGTCATGGATGAGGCTAGAG 1507
Query 1367 AGGAAGAGGAGGAGAGTGCAGAGACAAAAGACTCAAGAACAAATGAAACAA-CTAGAGGT 1425
|||| | | |||| |||| ||||||||||||| |||||||| ||||||||| | ||||||
Sbjct 1508 AGGA-G-G-AGGATAGTGTAGAGACAAAAGACACAAGAACATATGAAACAATC-AGAGGT 1563
Query 1426 TTAGAGAT-GA------T----TGAT-GA--A-GAGACAAAGAAATCGACTGAAATTAAA 1470
|||||||| || | |||| || | |||||||||||||||||||||| |||
Sbjct 1564 TTAGAGATTGAAGCCAATGAAATGATTGATGAAGAGACAAAGAAATCGACTGAAACCAAA 1623
Query 1471 ACCGAAGCTCCATCAAGAATAGTCATGGACAAAGAGGAGGATGAAGAGACGAAGAAATCA 1530
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1624 ACCGAAGCTCCATCAAGAATAGTCATGGACAAAGAGGGGGATGAAGAGACAAAGAAATCA 1683
Query 1531 ACTGATACAGAAACCGAAGCTCCATCGAGAATAGTCATGGAGACTGAGGATGATGAAGAG 1590
||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 1684 ACTGAAACAGAAACCGAAGCTCCATCGAGAATAGTCATGGAGACAGAGAAGGATGAAGAG 1743
Query 1591 ACAATGAACTCAAGGGCTCGTGCTTCTGATGAAGCTGAAGCACTCTCAAAGAGCTCTCAA 1650
|| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1744 ACTATGAACTCTAGGGCTCGTGCTTCGGATGAAGCTGAAGCACTGTCAAAGAGCTCTCAA 1803
Query 1651 GGTTTTTCTACGGTGCAAGCGGAAACCGTACCCCATATGTCTTAA 1695
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1804 GGTTTTTCTACGGTGCAAGCTGAAACCGTACCCCATATGTCTTAA 1848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83784709605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5