BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341389
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12760.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Defective... 828 0.0
> AT3G12760.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Defective-in-cullin
neddylation protein (InterPro:IPR014764), Protein
of unknown function DUF298 (InterPro:IPR005176), UBA-like
(InterPro:IPR009060); BEST Arabidopsis thaliana protein match
is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2);
Has 857 Blast hits to 855 proteins in 202 species: Archae
- 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139;
Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). |
chr3:4054739-4056980 FORWARD LENGTH=1131
Length=1131
Score = 828 bits (448), Expect = 0.0
Identities = 478/493 (97%), Gaps = 0/493 (0%)
Strand=Plus/Plus
Query 165 TGAGGTGGAACCCCAAGACATAGTCACGTTGGTTCTTTCGTGGCATATGAATGCTGCCAC 224
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 485 TGAGGTGGAACCGCAAGACATAGTCACGTTGGTTCTTTCGTGGCATATGAATGCTGCAAC 544
Query 225 AGCTTGTGAATTTTCCAGGCAAGAATTTATCAGTGGATTACAGGCATTAGGTGTAGATTC 284
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 AGCGTGTGAGTTTTCCAGGCAAGAATTTATCAGTGGATTACAGGCATTAGGTGTAGATTC 604
Query 285 AATCGGGAAGTTGCACGAAAAGCTGCCATTTATGCGTTCTGAGCTTAAAGATGAACAAAA 344
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AATCGGGAAGTTGCAGGAAAAGCTGCCATTTATGCGTTCTGAGCTTAAAGATGAACAAAA 664
Query 345 GTTCCATGATATATACAACTTTGCTTTTGGGTGGGCGAAAGAGAAGGGGCAGAAATCTCT 404
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GTTCCATGAGATATACAACTTTGCTTTTGGGTGGGCGAAAGAGAAGGGGCAGAAATCTCT 724
Query 405 TGCTTTAGACACAGCGATTGGGATGTGGCAGTTGCTCTTTGCAGAAAGAGAGTGGCCATT 464
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 725 TGCCTTAGACACAGCGATTGGGATGTGGCAGTTGCTCTTTGCAGAAAGAGAGTGGCCTTT 784
Query 465 GGTAACTCACTGGTGTGATTTCTTGCAGGATCGTCATAACAAGGCCATATCTAAGGACAC 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GGTAACTCACTGGTGTGATTTCTTGCAGGATCGTCATAACAAGGCCATATCTAAGGACAC 844
Query 525 ATGGGCACAGCTCCTGGAATTTGCAAGGACGGTCGACCCGGTGCTGTCGAATTACGATGC 584
|||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 845 ATGGGCACAGCTACTGGAATTTTCAAGGATGGTCGACCCAGTGCTGTCGAATTACGATGC 904
Query 585 TGAAGGAGCATGGCCTTACCTCATTGATGAATTCGTTGAGTATTTGTATGACAAGAATGT 644
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 905 AGAAGGAGCATGGCCTTACCTGATTGATGAATTCGTTGAGTATTTGTATGACAAAAATGT 964
Query 645 CGTTGAGAAGTGA 657
|||||||||||||
Sbjct 965 CGTTGAGAAGTGA 977
Score = 287 bits (155), Expect = 1e-76
Identities = 163/167 (98%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 1 ATGCATAAGTTGAGTAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATAACAGGA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 225 ATGCATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATCACAGGA 284
Query 61 GCTAGCGAGAAGAATGCTCTTCAGGCTCTCAAAGCTAGTGATTGGCACCTTGAAGCAGCG 120
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 285 GCTAGTGAGAAGAATGCTCTTCAGGCTCTCAAAGCCAGTGATTGGCACCTTGAAGCAGCG 344
Query 121 TTTGATGTGTTTTACAGCCAGCCTCAACCAAGAAGCAATGCTGCTGA 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TTTGATGTGTTTTACAGCCAGCCTCAACCAAGAAGCAATGCTGCTGA 391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5