BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341402
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12900.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1812 0.0
> AT3G12900.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:4104576-4106112
FORWARD LENGTH=1074
Length=1074
Score = 1812 bits (981), Expect = 0.0
Identities = 1043/1074 (97%), Gaps = 0/1074 (0%)
Strand=Plus/Plus
Query 1 ATGGCTATCAATTTCGAGGACCAAACCACATTGTTCAATTTCGTGGTCACAGAAGGTAAC 60
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGGTATCAATTTCGAGGACCAAACCACATTGTTCAATTTCGTGGTCAGAGAAGGTAAC 60
Query 61 GGCGTGAAAGGAATGATTGACTCGGGCCTCTCTAGTGTTCCACAGCCCTTCGTCCAGCCT 120
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 GGCGTGAAAGGAATGATAGACTCGGGCCTCTCTAGTGTTCCACGGCCCTTCGTCCAGCCT 120
Query 121 CTCTCTGAGCGAATCCCGACCGAAAAAGCCCTTACGTGTGAGGCTACCCAGCCAATCGAT 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTCTGAGCGAATCCCGACCCAAAAAGCCCTTACGTGTGAGGCTACCCAGCCAATCGAT 180
Query 181 CTTTCCAAGCTAGACGGCCCACAACACAAGGAGGTGGCCAAGCAGATCGTCGAAGCTGCC 240
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 CTTTCCAACCTAGACGGCCCACAACACAAGGAGGTGGCCAAGCAGATTGTCGAAGCTGCC 240
Query 241 GAGACACTTGGCTTCTTCCAGGTGGTGAACCATGGTGTTTCGGTGGAGCTGCTGGAATTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GAGACACTTGGCTTCTTCCAGGTGGTGAACCATGGTGTTTCGGTGGAGCTGCTGGAGTTG 300
Query 301 CTAAAATCGTCCGCTCATGAGTTTTTTGCACAAGCTCCAGAGGAAAAAGCGATGTACCTG 360
||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 301 CTAAAATCGTCGGCTCATGAGTTTTTTGCACAAGCTCCTGAGGAAAAATCGATGTACCTG 360
Query 361 AAAGAAGTGAGTCCAAGCAAGCTGGTTAAGTACGGAACGAGCTTCGTACCAGATAAGGAG 420
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 361 AAGGAAGTGAGTCCAAGCAAGCTGGTTAAGTACGGAACGAGCTTTGTGCCAGATAAGGAG 420
Query 421 AAGGCGATTGAGTGGAAGGATTATGTGAGCATGCTTTACACCAATGACAGTGAGGCTCTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGGCGATTGAGTGGAAGGATTATGTGAGCATGCTTTACACCAATGACAGTGAGGCTCTT 480
Query 481 CAACACTGGCCTCAACCATGCAGGGAGATGGCACTTGAGTTCCTAAAATCATCGATGGAA 540
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 481 CAACACTGGCCTCAACCATGCAGGGAGGTGGCACTTGAGTTCCTAAATTCATCGATGGAA 540
Query 541 ATGGTGAAAAATGTAGTTAACATTCTGATGGAGAATGTTGGAGTGACACTAGAAGAAGAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGGTGAAAAATGTAGTTAACATTCTGATGGAGAATGTTGGAGTGACACTAGAAGAAGAG 600
Query 601 AAAATGAATGGTTTGATGGGAACCAAGATGGTCAACATGAACTACTACCCCACTTGTCCG 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 AAAATGAATGGTTTGATGGGAACCAAGATGGTCAACATGAACTACTACCCTACTTGTCCG 660
Query 661 AGCCCGGAGCTGACCATTGGCGTCGGCCGTCACTCCGACATGGGAATGTTGACCGTTTTA 720
||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 AGCCCCGAGCTGACCGTCGGCGTCGGCCGTCACTCAGACATGGGAATGTTGACCGTTTTA 720
Query 721 TTACAAGACGGCATTGGCGGTCTCTACGTTAAACTAGACAACGGTGAATGGGCCGAGATC 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTACAAGACGGCATTGGTGGTCTCTACGTTAAACTAGACAACGGTGAATGGGCCGAGATC 780
Query 781 CCTCCTGTCCATGGAGCTTTGGTCATCAACATCGGCGACACTTTGCAGATTTTGAGCAAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTCCTGTCCATGGAGCTTTGGTCATCAACATCGGCGACACTTTGCAGATTTTGAGCAAT 840
Query 841 GGGAAGTACAAAAGTGCTGAGCATAGGGTTCGAACTACAAACATCGGATCAAGAGTCTCT 900
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 GGGAAGTACAAAAGTGCGGAGCATAGGGTTCGAACCACAAACATCGGATCAAGAGTCTCT 900
Query 901 GTGCCCATTTTCACGGCACCTAATCCCTCCGAGAAGATCGGTCCGTTGCCGGAAGTTGTG 960
|||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||||||||
Sbjct 901 GTGCCCATTTTCACGGCACCAAATCCCTCCCAGAAGGTCGGTCCCTTGCCGGAAGTTGTG 960
Query 961 AAACGCGACGGAGTGGCTCGTTACAAGGAGATTTTGTTTCAAGACTACATGAATAACTTC 1020
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 961 AAACGCGACGGAGTGGCTCGTTACAAGGAGTTTTTGTTTCAAGACTACATGAATAACTTC 1020
Query 1021 TTCGGCCAACCACACGACGGaaaaaaaTCTCTGGACTTCGCACGTGCCGAGTGA 1074
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1021 TTCGGCCAACCACACGACGGCAAAAAATCTCTCGACTTCGCACGTGCCGAGTGA 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5