BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341414
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12990.1 | Symbols: RRP45a | ribonuclease PH45A | chr3:41561... 769 0.0
AT3G60500.1 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family ... 641 0.0
> AT3G12990.1 | Symbols: RRP45a | ribonuclease PH45A | chr3:4156198-4157964
FORWARD LENGTH=1193
Length=1193
Score = 769 bits (416), Expect = 0.0
Identities = 462/484 (95%), Gaps = 4/484 (1%)
Strand=Plus/Plus
Query 404 GGAACTTGGTTGATGCTGCAAATATTGCTGCTTTAGCGGCACTCTTGACATTCAGGAGAC 463
||||||||||||||||||| ||| ||||||| ||||| |||||| |||| ||||||||||
Sbjct 590 GGAACTTGGTTGATGCTGCTAATGTTGCTGCCTTAGCCGCACTCATGACTTTCAGGAGAC 649
Query 464 CTGATTGCACTGTAGGAGGGGAGAACAGTCAAGAAGTGATCATACATCCACCCGAAGAAA 523
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 650 CTGATTGCACTGTAGGAGGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAA 709
Query 524 GGGAACCACTTCCGTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTA 583
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GGGAACCACTTCCTTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTA 769
Query 584 ATAAAGGCAGTATCTTGGTGATGGACCCAACAGTT--GTTGAAGAAGCTGTTATGTCTGG 641
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct 770 ATAAAGGCAGTATCTTGGTGATGGACCCAAC--TTACGTTGAAGAAGCTGTTATGTGTGG 827
Query 642 GAGAATGACTGTGACAGTCAATGCCAATGGCGATATATGCGCAATCCAGAAACCAGGAGA 701
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 828 GAGAATGACTGTGACAGTCAATGCCAATGGCGATATATGCGCAATCCAAAAACCAGGAGA 887
Query 702 AGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCCTCAAGAGCTGC 761
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 888 AGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCTTCAAGAGCTTC 947
Query 762 TGCAACAACAAAGATAATTAGAGAAGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACA 821
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 948 TGCAACAACAAAGATAATTAGAGATGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACA 1007
Query 822 GAAGGTGATGCGACATCATACTTTGGCTAAGTCTGAAGTTTTGGGACCTGTTGAAGTTGT 881
|||||||| ||| |||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1008 GAAGGTGAAGCGGCATCATACTTTGGCTAAGTCTGAAGTTTTGGGACCTATTGTAGTTGT 1067
Query 882 GTAG 885
||||
Sbjct 1068 GTAG 1071
Score = 649 bits (351), Expect = 0.0
Identities = 387/405 (96%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 1 ATGGATGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGTAAATTCGTGGAA 60
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 148 ATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGCAAATTCGTTGAA 207
Query 61 TCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 TCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTT 267
Query 121 ACTATTAAGTTTGGCAAGGAATATGGTAGCTCAGAAGTTCAACTAGGTCAGACTCATGTA 180
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 268 ACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAACTGGGTCAGACTCATGTA 327
Query 181 ATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAATGAAGGCTCC 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 328 ATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAGTGAAGGCTCC 387
Query 241 TTCTCTATCTTCACGGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCTGTTCATCCT 300
|||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 388 TTCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCAGGGCATCCT 447
Query 301 GGTGAATCTGCTGTTGAGCTGGGCCGTATTATAGACCGTGCTCTAAGAGAAAGCCGTGCA 360
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 448 GGTGAATCTGCTGTTGAGCTTGGCCGTATTATAGACCGTGCTCTACGAGAAAGCCGTGCA 507
Query 361 GTAGATACAGAGTCGCTCTGTGTTTTTGCTGGAAAGCTGGTCTGG 405
||||||||||||||||| |||||| | || ||||||||||| |||
Sbjct 508 GTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGGTTTGG 552
> AT3G60500.1 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family
protein | chr3:22353946-22356585 FORWARD LENGTH=1636
Length=1636
Score = 641 bits (347), Expect = 0.0
Identities = 430/470 (91%), Gaps = 6/470 (1%)
Strand=Plus/Plus
Query 404 GGAACTTGGTTGATGCTGCAAATATTGCTGCTTTAGCGGCACTCTTGACATTCAGGAGAC 463
||||||| ||||||||||||||||||||||||||||| || ||| ||||||| |||||||
Sbjct 617 GGAACTTAGTTGATGCTGCAAATATTGCTGCTTTAGCAGCTCTCATGACATTTAGGAGAC 676
Query 464 CTGATTGCACTGTAGGAGGGGAGAACAGTCAAGAAGTGATCATACATCCACCCGAAGAAA 523
| || |||||||||||||| ||||| |||||||||||||||||||||||| || ||||
Sbjct 677 CCGACTGCACTGTAGGAGGAGAGAATGGTCAAGAAGTGATCATACATCCACTAGAGGAAA 736
Query 524 GGGAACCACTTCCGTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTA 583
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GGGAACCACTTCCATTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTA 796
Query 584 ATAAAGGCAGTATCT-TGGTGATGGACCCAACAGT-TGTTGAAGAAGCTGTTATGTCTGG 641
||||||||| || | |||||||||||||||| | |||||||||||| ||||||| |||
Sbjct 797 ATAAAGGCAACAT-TGTGGTGATGGACCCAACT-TATGTTGAAGAAGCAGTTATGTGTGG 854
Query 642 GAGAATGACTGTGACAGTCAATGCCAATGGCGATATATGCGCAATCCAGAAACCAGGAGA 701
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 855 GAGAATGACTGTGACAGTTAATGCCAATGGCGATATATGCGCAATCCAAAAACCGGGGGA 914
Query 702 AGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCCTCAAGAGCTGC 761
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 915 AGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCTTCAAGAGCTGC 974
Query 762 TGCAACAACAAAGATAATTAGAGAAGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACA 821
||||||||||||||| |||||||||| |||||||||||| ||| ||||||| |||| |||
Sbjct 975 TGCAACAACAAAGATCATTAGAGAAGAAGTTGAAGCATATAACTGTGAGAGAAGCTTACA 1034
Query 822 GAAGGTGATGCGACATCATACTTTGGCTAAGTCTGAAGTTT-TGGGACCT 870
|||||||| |||||||| ||||||||||| |||||||||| ||| ||||
Sbjct 1035 GAAGGTGAAGCGACATCCCACTTTGGCTAAATCTGAAGTTTCTGG-ACCT 1083
Score = 521 bits (282), Expect = 3e-147
Identities = 365/406 (90%), Gaps = 2/406 (0%)
Strand=Plus/Plus
Query 1 ATGGATGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGTAAATTCGTGGAA 60
||||| ||||| ||| ||||||||||||||||||||| || || |||||||||||||||
Sbjct 175 ATGGAGGGGAGATTGGCTAATATGTGGAGGTTGACTGTTAACGAAAGTAAATTCGTGGAA 234
Query 61 TCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTT 120
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 235 ACTGCGTTGCAATCTGAGCTCAGAGTAGATGGTCGTGGCCTTTATGATTATCGCAAGCTT 294
Query 121 ACTATTAAGTTTGGCAAGGAATATGGTAGCTCAGAAGTTCAACTAGGTCAGACTCATGTA 180
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 295 ACTATTAAGTTTGGCAAAGAATATGGTAGCTCGGAAGTTCAACTTGGTCAGACTCATGTA 354
Query 181 ATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAATGAAGGCTCC 240
|||| ||| |||||||||||| | |||||||||||||||||||||||||||||||| | |
Sbjct 355 ATGGGTTTCGTGACTGCTCAGTTGGTACAACCTTACAAAGACAGACCTAATGAAGGGT-C 413
Query 241 T-TCTCTATCTTCACGGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCTGTTCATCC 299
| |||| ||||||||||| |||||||||||||||||||| || |||||||||| || |||
Sbjct 414 TCTCTCGATCTTCACGGAATTTTCTCCAATGGCTGATCCGTCTTTTGAGCCTGGTCGTCC 473
Query 300 TGGTGAATCTGCTGTTGAGCTGGGCCGTATTATAGACCGTGCTCTAAGAGAAAGCCGTGC 359
||| |||||||| || ||| |||| || ||||| || |||| ||||||||||||||||||
Sbjct 474 TGGCGAATCTGCAGTGGAGTTGGGACGCATTATCGATCGTGGTCTAAGAGAAAGCCGTGC 533
Query 360 AGTAGATACAGAGTCGCTCTGTGTTTTTGCTGGAAAGCTGGTCTGG 405
||||||||||||||| ||||| ||| | ||||||||| |||| |||
Sbjct 534 AGTAGATACAGAGTCACTCTGCGTTCTAGCTGGAAAGATGGTTTGG 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5