BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg341444 Length=948 Score E Sequences producing significant alignments: (Bits) Value AT3G13228.1 | Symbols: | RING/U-box superfamily protein | chr3... 623 1e-177 AT1G18770.1 | Symbols: | RING/U-box superfamily protein | chr1... 187 2e-46 > AT3G13228.1 | Symbols: | RING/U-box superfamily protein | chr3:4266964-4268251 FORWARD LENGTH=1288 Length=1288 Score = 623 bits (337), Expect = 1e-177 Identities = 514/597 (86%), Gaps = 22/597 (4%) Strand=Plus/Plus Query 357 GGATCTTGAACCAGAAGA-T--GCCGGCACAATCAGAGTCGATGCATTGATCTTCTGTGA 413 ||||| ||||||| |||| | | |||||||||||||||| ||||| ||||| ||| Sbjct 510 GGATCCTGAACCAAAAGATTCCGGCGGCACAATCAGAGTCAATGCAGTGATCAAGAATGA 569 Query 414 AGATGATATCTTGACTTTCACGACTTTGTCCTCTGCCAACGAATTCAT-AATCGATGATC 472 | |||||||||||||||||||||||||| | | || |||||||||| | || | | ||| Sbjct 570 AAATGATATCTTGACTTTCACGACTTTGACGTTTGTCAACGAATTCCTCAA-CCAAGAT- 627 Query 473 GTGACGAGTGTCGAAGCAAAGTAGACTTGAATGATTTCTTGAAAGAAGCAGGGATTAGCG 532 | |||| | ||||||| | | ||||| |||| ||||||||||| |||| Sbjct 628 -T----TTTGTC---TC---GTAGACTGGTGTAATTTCATGAAGGAAGCAGGGATCAGCG 676 Query 533 ACCACAGTATTCAACTTGCGATGTATCA-AATTGACTATGTTGCTCAAATAACTTCTTCC 591 |||| | ||||| | ||| ||| ||||| | || | |||||| | ||||||||||||| Sbjct 677 ACCAAAATATTCCAGTTGTGATTTATCATATTTTA-TATGTTATTAAAATAACTTCTTCT 735 Query 592 GCAAGTAATGGGTATTCTCCAGGGTGTGCTTTACAAGTGTCGTTGAATCTTTTTCCTCAC 651 |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 736 GCAAGTAATGGGCATTCTCCCGGGTGTGCTTTACAAGTGTCGTTGTATCTTTTTCCTCAC 795 Query 652 GACGAGCCTCATGATATCGAAGAAGTGGTTCAAGTCTCGTTTGACGAGACCGCTAATATC 711 |||||| | |||||||||||||| |||||||||||||||||||||||| ||||| || Sbjct 796 GACGAG--AC-TGATATCGAAGAAGCAGTTCAAGTCTCGTTTGACGAGACCACTAATTTC 852 Query 712 TGTTTGGGACCAGCAAGCAAGCTCGTGGTCAAGTCCTTAACCAGGGAAATATACGACAAG 771 ||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |||||| Sbjct 853 TGTTTGGGACCCGCAAGCAAACTCGTGGTCAAGTCCTTAACCAGGAAAATATATGACAAG 912 Query 772 ATTAATTATACAGGCGAAAGATGCACAATTTGTCTGGAAGAGTTTAACAATGGAGGAAGA 831 ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | Sbjct 913 ATTAATTATACAGGCGAAAGATGCACAATTTGTTTGGAAGAGTTTAACGCTGGAGGAATA 972 Query 832 CTTGTGGCTTTACCTTGTGGACATGACTTTGACGATGAGTGTGCCGTAAAGTGGTTTGAG 891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 CTTGTGGCTTTACCTTGTGGACATGACTTTGACGATGAGTGTGCCGTAAAGTGGTTTGAG 1032 Query 892 ACCAATCACGTTTGTCCACTGTGTCGTTACGAGTTGCCATGTGAAGAAGAGCAATGA 948 ||||||||| |||||||| |||||||||||||||||||| | |||||||| |||||| Sbjct 1033 ACCAATCACTTTTGTCCATTGTGTCGTTACGAGTTGCCACGCGAAGAAGATCAATGA 1089 Score = 329 bits (178), Expect = 2e-89 Identities = 299/356 (84%), Gaps = 13/356 (4%) Strand=Plus/Plus Query 14 TACGCTTGGATTACAATCACAAAATCAAACATGATCCTGAACCAGAAGATGCGGGCACAA 73 ||||| |||||| || ||||||||||||| | |||||| |||||||||| ||||||| || Sbjct 125 TACGCGTGGATTTCAGTCACAAAATCAAAGACGATCCTAAACCAGAAGAAGCGGGCATAA 184 Query 74 TTAGAATCAATGCAAGGGTCTTCCGTGAAGCTGATATCTTGACATACACGACGTTTTCGT 133 ||| | ||||||||| | ||| ||||||| |||||| |||||| | ||||||| |||| Sbjct 185 TTATAGTCAATGCAATGATCTACCGTGAAACTGATACCTTGACTTTGACGACGTCGTCGT 244 Query 134 TTCCCGACGAACTCATCA---ACGAT-G--A--A-TGTCAAAGCAAAGTGGTTTTGATTC 184 | ||||||||||||||| | ||| | | | ||||||| |||| ||| ||||||| Sbjct 245 CTGCCGACGAACTCATCAGCGATGATGGCAACGAGTGTCAAATCAAAATGGATTTGATTA 304 Query 185 ATCTCTTGAAGGAAGCTGGGATGAGCGACTACGATACTGCACATATGATGTATCACTTTA 244 || ||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||| Sbjct 305 ATATCTTGAAGGTAGCAGGGCTCAGCGACTACGATACTGCACATATGATGTATCACTTTA 364 Query 245 TTGGTTATGTTGCTGAAATAACT-TCTTCCGCAAGTGAAGGGTATTCTCCAGGGTGTGCT 303 || ||||||||||||||| | |||||| |||||||||||||||||||||||| |||| Sbjct 365 TTCCCCATGTTGCTGAAATAA-TGTCTTCCCCAAGTGAAGGGTATTCTCCAGGGTCTGCT 423 Query 304 TTAGAAGTGTCGTTG-GATCTTCTTCTTATCGATGAGAGTTATATTGAAGAAGCGG 358 ||||||||||||| | | |||||||||| |||||| |||| ||||||| | ||||| Sbjct 424 TTAGAAGTGTCGTGGTG-TCTTCTTCTTCTCGATGTGAGTCATATTGAGGCAGCGG 478 > AT1G18770.1 | Symbols: | RING/U-box superfamily protein | chr1:6473370-6474048 REVERSE LENGTH=321 Length=321 Score = 187 bits (101), Expect = 2e-46 Identities = 180/216 (83%), Gaps = 13/216 (6%) Strand=Plus/Plus Query 724 GCAAGCAAGCTCGTGGTCAAGTCCTTAACCAGGGAA-ATATACGACAAGATTA--A-TTA 779 ||||||||||||||||||||||| ||| ||||| || |||||| | | || | | || Sbjct 103 GCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGG-AAGATATACAAGATGACCACTAGTTC 161 Query 780 TACAGGCGAAA-GATGCACAATTTGTCTGGAAGAGTTTAAC-AATGGAGGAAGACTTGTG 837 ||| || |||| | |||| ||||||| |||||||||||| || ||| ||||| |||| Sbjct 162 TACTGGTGAAATG-TGCATAATTTGTTTGGAAGAGTTTAGTGAA-GGAAGAAGAGTTGTT 219 Query 838 GCTTTACCTTGTGGACATGACTTTGACGATGAGTGTG-CCGTAAAGTGGTTTGAGACCAA 896 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 220 ACTTTACCTTGTGGACATGACTTTGACGATGAGTGTGTCC-TAAAGTGGTTTGAGACCAA 278 Query 897 TCAC-GTTTGTCCACTGTGTCGTTACGAGTTGCCAT 931 |||| ||| | || || ||||||| | ||||||||| Sbjct 279 TCACAGTT-GCCCCCTCTGTCGTTTCAAGTTGCCAT 313 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46366117681 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5