BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341444
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13228.1 | Symbols: | RING/U-box superfamily protein | chr3... 623 1e-177
AT1G18770.1 | Symbols: | RING/U-box superfamily protein | chr1... 187 2e-46
> AT3G13228.1 | Symbols: | RING/U-box superfamily protein | chr3:4266964-4268251
FORWARD LENGTH=1288
Length=1288
Score = 623 bits (337), Expect = 1e-177
Identities = 514/597 (86%), Gaps = 22/597 (4%)
Strand=Plus/Plus
Query 357 GGATCTTGAACCAGAAGA-T--GCCGGCACAATCAGAGTCGATGCATTGATCTTCTGTGA 413
||||| ||||||| |||| | | |||||||||||||||| ||||| ||||| |||
Sbjct 510 GGATCCTGAACCAAAAGATTCCGGCGGCACAATCAGAGTCAATGCAGTGATCAAGAATGA 569
Query 414 AGATGATATCTTGACTTTCACGACTTTGTCCTCTGCCAACGAATTCAT-AATCGATGATC 472
| |||||||||||||||||||||||||| | | || |||||||||| | || | | |||
Sbjct 570 AAATGATATCTTGACTTTCACGACTTTGACGTTTGTCAACGAATTCCTCAA-CCAAGAT- 627
Query 473 GTGACGAGTGTCGAAGCAAAGTAGACTTGAATGATTTCTTGAAAGAAGCAGGGATTAGCG 532
| |||| | ||||||| | | ||||| |||| ||||||||||| ||||
Sbjct 628 -T----TTTGTC---TC---GTAGACTGGTGTAATTTCATGAAGGAAGCAGGGATCAGCG 676
Query 533 ACCACAGTATTCAACTTGCGATGTATCA-AATTGACTATGTTGCTCAAATAACTTCTTCC 591
|||| | ||||| | ||| ||| ||||| | || | |||||| | |||||||||||||
Sbjct 677 ACCAAAATATTCCAGTTGTGATTTATCATATTTTA-TATGTTATTAAAATAACTTCTTCT 735
Query 592 GCAAGTAATGGGTATTCTCCAGGGTGTGCTTTACAAGTGTCGTTGAATCTTTTTCCTCAC 651
|||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 736 GCAAGTAATGGGCATTCTCCCGGGTGTGCTTTACAAGTGTCGTTGTATCTTTTTCCTCAC 795
Query 652 GACGAGCCTCATGATATCGAAGAAGTGGTTCAAGTCTCGTTTGACGAGACCGCTAATATC 711
|||||| | |||||||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 796 GACGAG--AC-TGATATCGAAGAAGCAGTTCAAGTCTCGTTTGACGAGACCACTAATTTC 852
Query 712 TGTTTGGGACCAGCAAGCAAGCTCGTGGTCAAGTCCTTAACCAGGGAAATATACGACAAG 771
||||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct 853 TGTTTGGGACCCGCAAGCAAACTCGTGGTCAAGTCCTTAACCAGGAAAATATATGACAAG 912
Query 772 ATTAATTATACAGGCGAAAGATGCACAATTTGTCTGGAAGAGTTTAACAATGGAGGAAGA 831
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 913 ATTAATTATACAGGCGAAAGATGCACAATTTGTTTGGAAGAGTTTAACGCTGGAGGAATA 972
Query 832 CTTGTGGCTTTACCTTGTGGACATGACTTTGACGATGAGTGTGCCGTAAAGTGGTTTGAG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 CTTGTGGCTTTACCTTGTGGACATGACTTTGACGATGAGTGTGCCGTAAAGTGGTTTGAG 1032
Query 892 ACCAATCACGTTTGTCCACTGTGTCGTTACGAGTTGCCATGTGAAGAAGAGCAATGA 948
||||||||| |||||||| |||||||||||||||||||| | |||||||| ||||||
Sbjct 1033 ACCAATCACTTTTGTCCATTGTGTCGTTACGAGTTGCCACGCGAAGAAGATCAATGA 1089
Score = 329 bits (178), Expect = 2e-89
Identities = 299/356 (84%), Gaps = 13/356 (4%)
Strand=Plus/Plus
Query 14 TACGCTTGGATTACAATCACAAAATCAAACATGATCCTGAACCAGAAGATGCGGGCACAA 73
||||| |||||| || ||||||||||||| | |||||| |||||||||| ||||||| ||
Sbjct 125 TACGCGTGGATTTCAGTCACAAAATCAAAGACGATCCTAAACCAGAAGAAGCGGGCATAA 184
Query 74 TTAGAATCAATGCAAGGGTCTTCCGTGAAGCTGATATCTTGACATACACGACGTTTTCGT 133
||| | ||||||||| | ||| ||||||| |||||| |||||| | ||||||| ||||
Sbjct 185 TTATAGTCAATGCAATGATCTACCGTGAAACTGATACCTTGACTTTGACGACGTCGTCGT 244
Query 134 TTCCCGACGAACTCATCA---ACGAT-G--A--A-TGTCAAAGCAAAGTGGTTTTGATTC 184
| ||||||||||||||| | ||| | | | ||||||| |||| ||| |||||||
Sbjct 245 CTGCCGACGAACTCATCAGCGATGATGGCAACGAGTGTCAAATCAAAATGGATTTGATTA 304
Query 185 ATCTCTTGAAGGAAGCTGGGATGAGCGACTACGATACTGCACATATGATGTATCACTTTA 244
|| ||||||||| ||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 305 ATATCTTGAAGGTAGCAGGGCTCAGCGACTACGATACTGCACATATGATGTATCACTTTA 364
Query 245 TTGGTTATGTTGCTGAAATAACT-TCTTCCGCAAGTGAAGGGTATTCTCCAGGGTGTGCT 303
|| ||||||||||||||| | |||||| |||||||||||||||||||||||| ||||
Sbjct 365 TTCCCCATGTTGCTGAAATAA-TGTCTTCCCCAAGTGAAGGGTATTCTCCAGGGTCTGCT 423
Query 304 TTAGAAGTGTCGTTG-GATCTTCTTCTTATCGATGAGAGTTATATTGAAGAAGCGG 358
||||||||||||| | | |||||||||| |||||| |||| ||||||| | |||||
Sbjct 424 TTAGAAGTGTCGTGGTG-TCTTCTTCTTCTCGATGTGAGTCATATTGAGGCAGCGG 478
> AT1G18770.1 | Symbols: | RING/U-box superfamily protein | chr1:6473370-6474048
REVERSE LENGTH=321
Length=321
Score = 187 bits (101), Expect = 2e-46
Identities = 180/216 (83%), Gaps = 13/216 (6%)
Strand=Plus/Plus
Query 724 GCAAGCAAGCTCGTGGTCAAGTCCTTAACCAGGGAA-ATATACGACAAGATTA--A-TTA 779
||||||||||||||||||||||| ||| ||||| || |||||| | | || | | ||
Sbjct 103 GCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGG-AAGATATACAAGATGACCACTAGTTC 161
Query 780 TACAGGCGAAA-GATGCACAATTTGTCTGGAAGAGTTTAAC-AATGGAGGAAGACTTGTG 837
||| || |||| | |||| ||||||| |||||||||||| || ||| ||||| ||||
Sbjct 162 TACTGGTGAAATG-TGCATAATTTGTTTGGAAGAGTTTAGTGAA-GGAAGAAGAGTTGTT 219
Query 838 GCTTTACCTTGTGGACATGACTTTGACGATGAGTGTG-CCGTAAAGTGGTTTGAGACCAA 896
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 220 ACTTTACCTTGTGGACATGACTTTGACGATGAGTGTGTCC-TAAAGTGGTTTGAGACCAA 278
Query 897 TCAC-GTTTGTCCACTGTGTCGTTACGAGTTGCCAT 931
|||| ||| | || || ||||||| | |||||||||
Sbjct 279 TCACAGTT-GCCCCCTCTGTCGTTTCAAGTTGCCAT 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5