BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341528
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11950.1 | Symbols: | Protein of unknown function (DUF1191)... 619 7e-177
> AT4G11950.1 | Symbols: | Protein of unknown function (DUF1191)
| chr4:7173276-7174259 REVERSE LENGTH=984
Length=984
Score = 619 bits (335), Expect = 7e-177
Identities = 458/515 (89%), Gaps = 18/515 (3%)
Strand=Plus/Plus
Query 1 ATGGGCACGGAACAAAACTCTATTTTGATCAAGTTCTTGAGTAGCGTGGCAAGTGGGAGC 60
|||||||||||||||||| ||||||||||||| ||||| || || | ||||||||| |||
Sbjct 463 ATGGGCACGGAACAAAACCCTATTTTGATCAAATTCTTAAGCAGTGAGGCAAGTGGTAGC 522
Query 61 CCTAAACCTAACAC---GAAGAACTCATCTCTCTTGTGTGCTTGCTTCACAAGTAACGGT 117
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 523 CCTAAACCTAACACGAAGAAGAACTCATCTGTCTTGTGTGCTTGCTTCACAAGTAACGGT 582
Query 118 AACATAACGTTTAGGGAGCAAGTTTCAGCCTCCGTTTTCTTGGGAACAAGACAAGGGCAT 177
|||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||
Sbjct 583 AACATAACGTTTAGAGAGCAAGTTTCAGCTTATGTTTGCTTGGGAACAAGACAAGGGCAT 642
Query 178 TATGTGCTGGTGATTAGAGCTCATGATAGTAGTGGTCGTGGTAGTACGTTGGTAACGCCG 237
|| | ||| ||||||||||||||||||||| | ||| | ||||||||| ||||||| |||
Sbjct 643 TACGCGCTTGTGATTAGAGCTCATGATAGTGGCGGTGGCGGTAGTACGGTGGTAACACCG 702
Query 238 CCGTCATCTCCGGCGGTGAATGACGGTGGCGGAGGGAGATT-AGC-GGT------TGG-G 288
||||||||||||| ||| ||||||||||||||||| ||| ||| ||| ||| |
Sbjct 703 TCGTCATCTCCGGCTTTGACTGACGGTGGCGGAGGGAAATTGAGCCGGTGGAAAGTGGCG 762
Query 289 ------AGTGTAATTGGGTCAATGATTGGAGCGTTTCTGTTACGGTTATTGGTGGTGGCG 342
||||| || || ||||| |||||||||||||||||| |||||||||||||||||
Sbjct 763 GTTGGGAGTGTGATAGGTTCAATAATTGGAGCGTTTCTGTTAGGGTTATTGGTGGTGGCG 822
Query 343 ATGGTAGTGAAAGGGGAGAAGAAAACGATgagagaggagatggagaggagagCTTATGAA 402
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 823 ATGGTAGTGAAAGGGAAGAAGAAAGCGATGAGAGAGGAGATGGAGAGGAGAGCTTATGAA 882
Query 403 GAAGAAGCACTTCCGGTTTCAATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCAAGA 462
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 883 GAAGAAGCACTTCAGGTTTCAATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCGAGA 942
Query 463 ACAAGAACGGTTCCAAGATTTGACAATACTAGGTA 497
|||||||| ||||||||||||| |||||||||||
Sbjct 943 TCAAGAACGATTCCAAGATTTGAAAATACTAGGTA 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5