BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341606
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14820.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1491 0.0
> AT3G14820.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:4978726-4980241 FORWARD LENGTH=1056
Length=1056
Score = 1491 bits (807), Expect = 0.0
Identities = 894/937 (95%), Gaps = 2/937 (0%)
Strand=Plus/Plus
Query 1 ATGGATACAGGAAATAATAATGACATCCCAACTCTTCTTAAGTCCAATTTTCCTCCCTAT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ATGGATACAGGAAATAATAATGACATCCCCACTCTTCTTAAGTCCAATTTTCCTCCCTAT 180
Query 61 GGTCGAGATTTTCCTGGTGCTATTCCTACCGGTAGATTTTCAGACGGGAAAGTTCCATCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTCGAGATTTTCCTGGTGCTATTCCTACCGGTAGATTTTCAGACGGGAAAGTTCCATCG 240
Query 121 GACATCATTGCGGAAAAATTAGGGATAGCAAAGACACTACCACCATATTTAGGCTCGAAT 180
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 241 GACATCATTGCGGAATCGTTAGGAATAGCAAAAACACTACCACCATATTTAGGCTCGAAT 300
Query 181 CTAAAGCCACATGATCTTCTAAAAGGTGTAATCTTTGCTTCTGGAGGTTCTGGTTATGAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CTAAAGCCACATGATCTTCTAAAAGGTGTAATCTTTGCTTCTGGAGGTTCCGGTTATGAT 360
Query 241 CCATTAACATCTAAATTACTGTCTGTAGTATCAATGTCAGACCAACTAAAATATTTTCAA 300
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 CCATTAACATCTACATTACTGTCTGTAGTATCAATGTCAGACCAACTAAAGTATTTTCAA 420
Query 301 GAATACCTAGCAAAAATTAAGCAACACTTTGGAGAAGAAAAAGTTAAGTTTATATTGGAG 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GAATACCTAGCAAAAATTAAGCAACACTTTGGAGAAGAAAAAGTTAAGTTCATATTGGAG 480
Query 361 AAAAGTGTGTTTCTTGTGGTCTCTAGCAGTAATGATCTCGCTGAGACTTATTTGGTTCGA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 AAAAGTGTGTTTCTTGTGGTCTCTAGCAGTAATGATCTCGCTGAGACTTATTGGGTTCGA 540
Query 421 TCGGTCGAATATGATCGTAACTCGTATGCTGAATATCTGGTTGAATTGGCTTCAGAGTTC 480
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 541 TCGGTCGAATATGATCGTAACTCATATGCTGAATATCTGGTTGAGTTGGCTTCAGAGTTC 600
Query 481 ATCAAAGAATTATCTGGACTTGGAGCTAAAAACATTGGAGTGTTTAGCGGAGTACCAGTT 540
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 ATCAAAGAATTATCTGAACTTGGAGCTAAAAACATTGGACTGTTTAGCGGAGTACCAGTA 660
Query 541 GGGTGTGTACCCGCGCAAAGAACACTTTTTGGGGG-TTTCAAAAGAAAATGTTATGAAAA 599
|||||| ||||||||||||||||||||||||| || ||| ||| ||||||||||||||||
Sbjct 661 GGGTGTTTACCCGCGCAAAGAACACTTTTTGGAGGCTTTGAAA-GAAAATGTTATGAAAA 719
Query 600 GTTGAATAACATGGCACTTCATTTCAATTCAAAGCTATCTTCTAGTTTGGATACTCTAAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTGAATAACATGGCACTTCATTTCAATTCAAAGCTATCTTCTAGTTTGGATACTCTAAA 779
Query 660 GAAAGAATTGCCCGGTAAACTAGTATTTATCGATGTTTATGAAACTCTTCTCGACATCAT 719
||||||| ||||| | | |||| |||||||||| ||||| || ||||||||||| || ||
Sbjct 780 GAAAGAACTGCCCAGCAGACTAATATTTATCGACGTTTACGATACTCTTCTCGATATAAT 839
Query 720 CAAAAATCCTAGAAATTACGGATTTAAAGTAGCAGATAAAGGATGTTGTGGTACAGGAAA 779
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 TAAAAATCCTACAAATTACGGATTTAAAGTGGCAGATAAAGGATGTTGTGGTACAGGAAA 899
Query 780 AATTGAGTTGGTGGAATTGTGCAACAAATTTACTCCTTTTACATGTTCGGATGCATCGAC 839
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 AATTGAGTTGATGGAATTGTGCAATAAATTTACTCCTTTTACATGTTCGGATGCATCGAC 959
Query 840 TCATGTGTTCTTTGACTCTTATCATCCGAGTGAAAAGGCCTATCAGATTATCACTGATAA 899
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 960 TCATGTGTTCTTCGACTCTTATCATCCGAGTGAAAAGGCATATCAGATTATCACTCATAA 1019
Query 900 AGTGTTAGCAAAATACCTTAAGTACCTAAACAACTGA 936
| ||||||||||||||| ||| |||||||||| ||||
Sbjct 1020 ATTGTTAGCAAAATACCGTAAATACCTAAACACCTGA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5