BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341612
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14880.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1059 0.0
> AT3G14880.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: transcription factor-related (TAIR:AT4G18650.1); Has
560 Blast hits to 560 proteins in 40 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 558; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5006565-5007689
FORWARD LENGTH=735
Length=735
Score = 1059 bits (573), Expect = 0.0
Identities = 682/736 (93%), Gaps = 2/736 (0%)
Strand=Plus/Plus
Query 1 ATGAGCCAAGAGGCAGCGATAACGAGCTTCAAGAAATTCCAAGAGTCATGGATCGATCAG 60
|||||||||||| |||||||| | |||||||||||||||||| ||||||||||||| |||
Sbjct 1 ATGAGCCAAGAGACAGCGATAGCAAGCTTCAAGAAATTCCAACAGTCATGGATCGAGCAG 60
Query 61 CTACGAAACCACCTGAACCACCTCCGCTCCGTCCAAAACCACCACCGGAATTCCGCTACC 120
||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||
Sbjct 61 CTACGAAACCACCTGAACCACCTCCGCTCCGCCCAAAACCATCACCGGAACTCTGCTACC 120
Query 121 GGCGATGAGGAACGGTTAAGGGAAGCTGTGGAGAGAGTGATGGAACACTTTAGAGAGTAC 180
|| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 121 GGTGATGAGGAACGGTTAAGGGAGGCTGTGGACAGAGTGATGGAACACTTTAGAGAATAT 180
Query 181 CACAGGGCCAAGTGGGC-GACGACGGAGAAAGACGTGATCGGAGTTATGGCTACTCCTTG 239
||||||||||||||||| | ||||||| |||||||| |||| |||||||||| |||||||
Sbjct 181 CACAGGGCCAAGTGGGCTG-CGACGGATAAAGACGTCATCGAAGTTATGGCTTCTCCTTG 239
Query 240 GGCTTCAGCCCTTGAACGGTCACTCCATTGGGTCGGTGGTTGGCGACCAACAACCTTGTT 299
||||||||| ||||||||||| || || ||||||||||||||||||||||| ||||||||
Sbjct 240 GGCTTCAGCTCTTGAACGGTCGCTTCAGTGGGTCGGTGGTTGGCGACCAACCACCTTGTT 299
Query 300 TCATCTGGTTTACACTGAGTCGAGTATTTTATTTGAGTCTCGTATCGTTGATATACTTCG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCATCTGGTTTACACTGAGTCGAGTATTTTATTTGAGTCTCGTATCGTTGATATACTTCG 359
Query 360 TGGCTTTCGCACAGGTGACCTCAGCGATCTCTCTCCGTCTCAGTTCAGGGTTAAATTTGT 419
|||||||||||| ||||| ||||| |||||||| || ||||||||||||||| ||||||
Sbjct 360 TGGCTTTCGCACCGGTGATCTCAGTGATCTCTCCCCTTCTCAGTTCAGGGTTCCATTTGT 419
Query 420 CAAAGGCAGGACGGTGAGTGAGCTACAATGTGAGACGGTAAAAGAAGAGAACACGATAAC 479
||||||||||||||| |||||||||||||||||||| || || |||||||| |||||||
Sbjct 420 CAAAGGCAGGACGGTAAGTGAGCTACAATGTGAGACCGTGAAGGAAGAGAATGCGATAAC 479
Query 480 GGACGAGTTATCGGAGTGGCAAGACGATGCGAGTGACCTCGTCATGGGGACCTCTTCCGA 539
||| ||||| ||||||||||||||||||||||||||||| ||||||||||| || || ||
Sbjct 480 GGAAGAGTTGTCGGAGTGGCAAGACGATGCGAGTGACCTTGTCATGGGGACATCGTCAGA 539
Query 540 TCCCGAGCAGAGGATCCGACGGCTAGCAGAAATCGTCCATCGAACTGATGATCTGCGACT 599
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TCCCGACCAGAGGATCCGACGGCTAGCAGAAATCGTCCACCGAACTGATGATCTGCGACT 599
Query 600 GAGAACGATCACACGCGTGGTGGAGCTCCTGAGTCCGCTCCAACAAGCAGAGTTTCTTAT 659
||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||| |
Sbjct 600 GAGAACGATCACACGTGTGGTGGAGGTCTTGAGTCCGCTCCAACAAGCGGAGTTTCTTGT 659
Query 660 CGCTGCGGCTGAGCTTCGTACCGGCGTTGCTGGTTGGGGGACTAGCCATGACCGTCGTCG 719
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 660 CGCTGCGGCTGAGCTTCGTACAGGCGTTGCTGGTTGGGGGACTAGCCACGACCGTCGTCG 719
Query 720 AAGTTCCGAAGTTTAA 735
||||||||||||||||
Sbjct 720 AAGTTCCGAAGTTTAA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5