BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg341690

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52740.1 | Symbols: HTA9 | histone H2A protein 9 | chr1:1964...   392    1e-108


> AT1G52740.1 | Symbols: HTA9 | histone H2A protein 9 | chr1:19645268-19646482 
FORWARD LENGTH=807
Length=807

 Score =  392 bits (212),  Expect = 1e-108
 Identities = 343/407 (84%), Gaps = 6/407 (1%)
 Strand=Plus/Plus

Query  1    ATGTCTGGAAAAGGAGCGAAAGGACTGATAATGGGGAAACCCAACAGCAAAGACAAGGAC  60
            ||||| || ||||| || |||||  |||| ||||||||||||| | | |  |||||||| 
Sbjct  142  ATGTCGGGGAAAGGTGCTAAAGGTTTGATTATGGGGAAACCCAGCGGTAGCGACAAGGAT  201

Query  61   AAGGACAAGAAGAAACCAACCACTCGCTCTTCTCGTGCTGGTCTCCAGTTTCCAGTGGGA  120
            |||||||||||||| || | |||||| |||||||| |||||||||||||| ||||| || 
Sbjct  202  AAGGACAAGAAGAAGCCTATCACTCGTTCTTCTCGAGCTGGTCTCCAGTTCCCAGTTGGT  261

Query  121  AGAATCCATAGACTGTTGAAAG-GTAGGTCAACTGCTCATGGACGTGTTGGAGCAACTGC  179
            ||  | ||| | ||||| ||||   ||||| |||||||||||| | ||||||||||||||
Sbjct  262  AGGGTGCATCGTCTGTT-AAAGACAAGGTCCACTGCTCATGGAAGGGTTGGAGCAACTGC  320

Query  180  TGCGGTTTACACTGCTGCTATATTGGAGTATCTGACTGCAGAAGTCTTGGAGCTGGCTGG  239
             || |||||||| || || |||||||||||||||||||||||||| |||||| |||||||
Sbjct  321  AGCTGTTTACACAGCAGCAATATTGGAGTATCTGACTGCAGAAGTTTTGGAGTTGGCTGG  380

Query  240  TAATGCGAGCAAGGATC-TGAAAGTGAAGCGTAT-TACACCAAGGCACTTGCAGCTCGCT  297
            ||| || |||||||| | |||| ||||| ||||| | | || ||||| |||||||| || 
Sbjct  381  TAACGCCAGCAAGGA-CTTGAAGGTGAAACGTATCT-CGCCGAGGCATTTGCAGCTTGCG  438

Query  298  ATTCGTGGTGACGAGGAGCTCGATACTCTCATCAAAGGAACTATTGCTGGTGGTGGAGTC  357
            |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  439  ATTCGTGGAGATGAGGAGCTCGATACTCTCATCAAAGGAACTATAGCTGGTGGTGGAGTC  498

Query  358  ATTCCTCACATTCACAAGTCTCTCATCAACAAATCTGGCAAAGAATA  404
            || ||||| || ||||||  ||||||||||||||| | ||| |||||
Sbjct  499  ATCCCTCATATCCACAAGAGTCTCATCAACAAATCCGCCAAGGAATA  545



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5