BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341704
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15740.1 | Symbols: | RING/U-box superfamily protein | chr3... 701 0.0
> AT3G15740.1 | Symbols: | RING/U-box superfamily protein | chr3:5333879-5334553
REVERSE LENGTH=675
Length=675
Score = 701 bits (379), Expect = 0.0
Identities = 570/659 (86%), Gaps = 25/659 (4%)
Strand=Plus/Plus
Query 1 ATGGTTTTCTATGTAAACGATAACGTGGACAGCTTCATCGATGTTAAGCGGATCTACAAC 60
|||| ||||||||||||||||||||| |||| | | |||||||| |||||||||||||||
Sbjct 1 ATGGCTTTCTATGTAAACGATAACGTAGACAACGTGATCGATGTCAAGCGGATCTACAAC 60
Query 61 AACCACGACGGAGGTCTACGCAAGAACCAGAACTTGTTTTTCGATCTCCAAGTGCATTAC 120
|| ||||||||| ||||| |||| ||| || |||||||||||| || |||||||||||
Sbjct 61 GACTACGACGGAGAACTACGAAAGAGCCAAAAATTGTTTTTCGATTTCAAAGTGCATTAC 120
Query 121 ACTCGTGCCGAAGAAGATA-ATGACGACGGagaagaagaagaagaagaTCTTCCCAATTT 179
||||||||||||||||| | |||| |||| |||||||||||||| | ||||| ||||
Sbjct 121 ACTCGTGCCGAAGAAGA-AGATGATGACGTTGAAGAAGAAGAAGAT--T-TTCCCGATTT 176
Query 180 TGACAAACT-CGAAACTCTAACCGTTGAGCAAACTCACGAGTTTGATCGAGAATGGTTGT 238
|||||| || | ||||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 177 TGACAATCTTC-AAACTCTAACCCTTGAGCAAACACACGAGTTTGATCGAGATTGGTTGT 235
Query 239 TCGGTGGAGATGGTGATCATACACTAGCCATCGTCTA-CTACATTCTCGATTTGCTCCAA 297
| |||||||| ||||||||| |||||||||||||||| | ||||||| |||| |||||||
Sbjct 236 TTGGTGGAGACGGTGATCATTCACTAGCCATCGTCTATC-ACATTCTAGATTCGCTCCAA 294
Query 298 GTCCCTTGTTATTATGCGATTGTTAGCACTCTTACTGATGAGATTAAGGATTTGAAGAAA 357
|||||| ||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 295 GTCCCTCCTTATTCTGCTATTGTTAACACTCTTGCTGATGAGATTAAGGATTTGAAGAAA 354
Query 358 CATGATGCGAA---CGTGGAGAGGCTACAAGTAACGTTAGGTGTTACTGTGTCGAGGTTT 414
||| |||||| |||||||||| ||||||||| | ||||||||||||| |||||||||
Sbjct 355 GATGGTGCGAAAGACGTGGAGAGGGTACAAGTAAAGATAGGTGTTACTGTCTCGAGGTTT 414
Query 415 CCCGGTGAGGATGATGATCACCTAGACGTGCGA-T-----TTGCGGTTGCTCCAGCGAAC 468
|||||||| | ||||||||| |||| |||| | | ||||||||||||||||||||
Sbjct 415 CCCGGTGA--A-GATGATCACGTAGATGTGCAAGTGCAACTTGCGGTTGCTCCAGCGAAC 471
Query 469 AATGAGGCGGTGGAGACACATTTA-ACGACGGTTGTTGTTCAGAATGATGGATATTGTGT 527
||||||||||||||| || || | |||| |||||||| ||||||| || ||||||||
Sbjct 472 GATGAGGCGGTGGAGATGCACTTGGA-GACGCTTGTTGTTGAGAATGAAGGCTATTGTGT 530
Query 528 GATATGTATGGATA-TGATCCGAGTTGGGTCGGCTGTGGAGGCGGGTCGAATGCCGTGTT 586
|||||| ||||||| | |||||||||||||| | |||||| |||||||||||||||||||
Sbjct 531 GATATGCATGGATAAT-ATCCGAGTTGGGTCAGATGTGGAAGCGGGTCGAATGCCGTGTT 589
Query 587 TGCACGTATTTCATCGCAATTGTGGAGAGGAATGGCTTAGGAATAGTGGGATTTGTCCG 645
||| || |||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct 590 CGCATGTGTTTCATCGTACTTGTGGAGAGGAATGGCTTAGGAACAGTGGGATTTGTCCG 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5