BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341711
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15830.1 | Symbols: | phosphatidic acid phosphatase-related... 1338 0.0
AT3G15820.1 | Symbols: ROD1 | phosphatidic acid phosphatase-rel... 821 0.0
> AT3G15830.1 | Symbols: | phosphatidic acid phosphatase-related
/ PAP2-related | chr3:5354974-5356424 FORWARD LENGTH=988
Length=988
Score = 1338 bits (724), Expect = 0.0
Identities = 843/899 (94%), Gaps = 13/899 (1%)
Strand=Plus/Plus
Query 1 ATGTCAGACGCTGTAACCAAAACCGTCGCCCCTCTCCGTCGCAAATCTAACCCTATTAAC 60
||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 1 ATGTCAGACGCCGTAACCAAAACCGTCGCCCCTCTCCGTCGTAAAGCTAATCCTATTAAC 60
Query 61 GGAAAACACACAAACGGCGTGACCATTGACGGAACCCTCGACGACCACAATCGCCAAAT- 119
||||||||||| |||||||| ||||| ||||||| | ||||||||||||||||||||||
Sbjct 61 GGAAAACACACTAACGGCGTCACCATCGACGGAATCTTCGACGACCACAATCGCCAAATA 120
Query 120 CG--CAATAAATAGTCAAATGG-AGAACATTGCTAAGAAAACTGACGACGGCGGAGGAGA 176
| |||||||||| ||||||| || | |||||| |||||||||| ||||| ||| | |
Sbjct 121 GGACCAATAAATAGCCAAATGGAAG-ATATTGCTCAGAAAACTGATGACGGTGGA-G-G- 176
Query 177 AGAAGCAGAATGGACAAGCAAAGCGTCGTTTATGACGTGGACGATGCATGACATTGTTTA 236
|| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 177 AG--G-AGAATGGACAAGCAAAGCGTCGTTTATGACGTGGACGATGCATGACATAATTTA 233
Query 237 CGTGGCGAGACACCATTGGATACCATGTTTATTTGCGGCCGGAGTTCTGTTTTTTACGGT 296
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 234 CGTGGCGAGACACCATTGGATACCGTGTTTATTCGCGGCCGGAGTTATGTTTTTTACGGT 293
Query 297 TGTGGAGTACACATTCCAGATGACTCCTGCGAGTTCTCAGCCGTTTGATCTAGGATTTGT 356
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TGTGGAGTACACGTTCCAGATGACTCCTGCGAGTTCTCAGCCGTTTGATCTAGGATTTGT 353
Query 357 GGCCACACGCTCTCTGCATAGCATCTTGGCATCTTCACCGAATCTTAACACCGTTTTAGC 416
||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 354 GGCCACACGTTATCTGCATAGCATCTTGGCATCTTCACCCAATCTTAACACCGTTTTAGC 413
Query 417 CGCTCTAAACACGATTTTGGTAGGGATGCAAACAACGTATATTGGATGTACATGGGCAGT 476
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CGCTTTAAACACGATTTTGGTAGGGATGCAAACAACGTATATTGGATGTACATGGGCAGT 473
Query 477 GGAAGGACGACCACGAGCGACCATCGCGGCTCTATTCATGTTCACTTGTCGCGGCATTCT 536
||||||||||||||| || |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 474 GGAAGGACGACCACGGGCAACCATCGCGGCTTTATTCATGTTCACTTGTCGTGGCATTCT 533
Query 537 CGGCTACTCTACTCAGCTCCCTCGCCCTCAGGAATTTTTAGGATCAGGAGTAGATTATCC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CGGCTACTCTACTCAGCTCCCTCGCCCTCAGGAATTTTTAGGATCAGGAGTAGATTATCC 593
Query 597 GGTCGGAAACGTCTCGTTCTTCCTCTTCTACTCAGGTCACGTCGCCGGCTCGATGATCGC 656
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 594 GGTCGGAAACGTGTCGTTCTTCCTCTTCTACTCAGGTCACGTCGCCGGATCGATGATCGC 653
Query 657 ATCGTTGGACATGAAGAGAATGCAGAGGTTTAGGCTGGCGATGGTTTTTGACATCCTCAA 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 654 ATCGTTGGACATGAAGAGAATGCAGAGGTTTAGGCTGGCGATGGTTTTTGACATTCTCAA 713
Query 717 TGTCTTGCAATCGATCAGGCTGCTTGGTACGAGAGGGCATTACACCATTGATATTGCGGT 776
||| |||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 714 TGTATTGCAATCCATCAGGCTGCTTGGTACGAGAGGACACTACACGATTGATATTGCGGT 773
Query 777 TGGAGTTGGCGCTGGGATTCTCTTTGACTCATTAGCCGGGAAGTACGAAGAGATGAGCAA 836
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 774 TGGAGTTGGCGCTGGGATTCTCTTTGACTCATTGGCCGGGAAGTACGAAGAGATGAGCAA 833
Query 837 GAGACACTTAAG-AACTACTCGTTGTAGTTTGATCTCGAAAGACTCTCTAGTCAATTAA 894
|||||| ||| | || |||||||||||||||||| || |||||||||||||||| ||||
Sbjct 834 GAGACATTTACGGAA-TACTCGTTGTAGTTTGATTTCAAAAGACTCTCTAGTCACTTAA 891
> AT3G15820.1 | Symbols: ROD1 | phosphatidic acid phosphatase-related
/ PAP2-related | chr3:5351071-5353728 FORWARD LENGTH=1207
Length=1207
Score = 821 bits (444), Expect = 0.0
Identities = 761/913 (83%), Gaps = 26/913 (3%)
Strand=Plus/Plus
Query 1 ATGTCAGACGCTGTAACCAAAACCGTCGCCCCTCTCCGTCGCAAATCTAACCCTATTAAC 60
||||||| ||| | | | |||||| || | |||||||||||| ||||||| || |||||
Sbjct 147 ATGTCAGCCGCCGCAGCTGAAACCGACGTCTCTCTCCGTCGCAGATCTAACTCTCTTAAC 206
Query 61 GGAAAACACACAAACGGCGT-GACCATTGACGGAACCCTCGACGACCACAATCGCCAAAT 119
||||| ||||| |||||||| | |||||||||||||||| ||| || |||| || | |
Sbjct 207 GGAAACCACACTAACGGCGTCG-CCATTGACGGAACCCTAGACAACAACAACCGTCGCGT 265
Query 120 CGCA-AT--AAATAGTCAAATGGAGAACAT-TGCTAAGAAAACTGACGACGG---CG--G 170
|| | || ||| | ||| ||||| | || |||||||||||||||| |||| ||
Sbjct 266 CGGAGATACAAACACTCACATGGA-TATATCTGCTAAGAAAACTGACAACGGCTACGCCA 324
Query 171 A--G-G-AGAAGAAGCAGAATGGACAAGCAAAGCGTCGTTTATGACGTGGACGATGCATG 226
| | | | || || || ||||| ||||||||||||||| | |||||||||| || ||
Sbjct 325 ATGGTGTCGGAGGAGGAGGATGGAGAAGCAAAGCGTCGTTCACGACGTGGACGGCGCGTG 384
Query 227 ACATTGTTTACGTGGCGAGACACCATTGGATACCATGTTTATTTGCGGCCGGAGTTCTGT 286
| || || ||||||| |||| ||||||||||||| || | || || |||||| ||||||
Sbjct 385 ATATCGTCTACGTGGTGAGATACCATTGGATACCGTGCATGTTCGCTGCCGGACTTCTGT 444
Query 287 TTTTTACGGTTGTGGAGTACAC-ATTCCAGATGACTCCTGCGAGTTCTCAGCCGTTTGAT 345
| || | || ||||||||||| || ||||||| ||| ||||| ||| ||||||| |||
Sbjct 445 TCTTCATGGGCGTGGAGTACACGCTT-CAGATGATTCCCGCGAGATCTGAGCCGTTCGAT 503
Query 346 CTAGGATTTGTGGCCACACGCTCTCTGCATAGCATCTTGGCATCTTCACCGAATCTTAAC 405
|| || ||||||| ||| |||||| || || || | || |||||||||||| ||||||||
Sbjct 504 CTTGGGTTTGTGGTCACGCGCTCTTTGAATCGCGTATTAGCATCTTCACCGGATCTTAAC 563
Query 406 ACCGTTTTAGCCGCTCTAAACACGATTTTGGTAGGGATGCAAACAACGTATATTGGATGT 465
|| ||||||||||| ||||||||| | || ||||||||||||||||||||||||| |||
Sbjct 564 ACTGTTTTAGCCGCACTAAACACGGTGTTCGTAGGGATGCAAACAACGTATATTGTATGG 623
Query 466 ACATGGGCAGTGGAAGGACGACCACGAGCGACCATCGCGGCTCTATTCATGTTCACTTGT 525
|||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct 624 ACATGGTTAGTGGAAGGACGAGCACGAGCCACCATCGCGGCTTTATTCATGTTCACTTGT 683
Query 526 CGCGGCATTCTCGGCTACTCTACTCAGCTCCCTCGCCCTCAGGAATTTTTAGGATCAGGA 585
||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||
Sbjct 684 CGCGGCATTCTCGGCTACTCTACTCAGCTTCCTCTCCCTCAGGACTTTCTAGGATCAGGG 743
Query 586 GTAGATTATCCGGTCGGAAACGTCTCGTTCTTCCTCTTCTACTCAGGTCACGTCGCCGGC 645
|| |||| |||||| ||||| ||||| ||||||||||||| ||| || || |||||||||
Sbjct 744 GTTGATTTTCCGGTGGGAAATGTCTCTTTCTTCCTCTTCTTCTCTGGCCATGTCGCCGGC 803
Query 646 TCGATGATCGCATCGTTGGACATGAAGA-GAATGCAGAGGTTTAGGCTGGCGATGGTTTT 704
|||||||||||||| |||||||||| || ||||||||||||| || || || ||||| ||
Sbjct 804 TCGATGATCGCATCATTGGACATGA-GAAGAATGCAGAGGTTGAGACTTGCAATGGTCTT 862
Query 705 TGACATCCTCAATGTCTTGCAATCGATCAGGCTGCTTGGTACGAGAGGGCATTACACCAT 764
||||||||||||||| || || |||||||| ||||| ||||| ||||| |||||||| ||
Sbjct 863 TGACATCCTCAATGTATTACAGTCGATCAGACTGCTCGGTACAAGAGGACATTACACAAT 922
Query 765 TGATATTGCGGTTGGAGTTGGCGCTGGGATTCTCTTTGACTCATTAGCCGGGAAGTACGA 824
|| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 923 CGACCTTGCGGTTGGAGTTGGCGCTGGGATTCTCTTCGACTCATTGGCCGGAAAGTACGA 982
Query 825 AGAGATGA-G--CAAGAGACACTTAAGAACTACTCGTTGTAGTTTGATCTCGAAAGACTC 881
|||||||| | ||||||||| ||| | | ||| ||| ||||||||| |||||||||||
Sbjct 983 AGAGATGATGAGCAAGAGACATTTAGG--C-ACTGGTTTTAGTTTGATTTCGAAAGACTC 1039
Query 882 TCTAGTCAATTAA 894
|||||||||||||
Sbjct 1040 TCTAGTCAATTAA 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5