BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341749
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16230.2 | Symbols: | Predicted eukaryotic LigT | chr3:5500... 2025 0.0
> AT3G16230.2 | Symbols: | Predicted eukaryotic LigT | chr3:5500178-5503545
FORWARD LENGTH=1883
Length=1883
Score = 2025 bits (1096), Expect = 0.0
Identities = 1302/1393 (93%), Gaps = 47/1393 (3%)
Strand=Plus/Plus
Query 1 ATGTTAGCTTGCAGGACTCTGTTTAGGATTGATCGTGTGTTTGGGGTTACGAGTAGATGT 60
||||| |||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 292 ATGTTCGCTTACAGGACTCTGTTTAGGATTGACCGTGTATTTGGGTTTACGAGTAGATGT 351
Query 61 TTTCTATCGAAAACGGAATCTTTAAGTATCTTGAGCTTTAGGGGAAGTGAGAAGAGTGCC 120
|||| ||||||| |||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 352 TTTCAATCGAAACCGGAATCTTTTAGTATCCTGAGCTTTAGGGGAAGTGAGAAGAGTGCC 411
Query 121 ATGGATGGAT-TCAAGAAGCAGAAGATGTTTAATCGTATGATCCATCCCGGTTTTGA--A 177
|||||||||| | ||||||||||||||| | ||| || | | | || ||
Sbjct 412 ATGGATGGATAT-AAGAAGCAGAAGATGGTAAAT-TTA-G-T--GT---GG---AGACCC 459
Query 178 AGTTTCCACCTTCTGTGGCTTTCTCA-TGATGAGACAGAAGCTGGAAATGAAGTCCAAGA 236
| | |||| | || || | ||| | || | | |||||||||||||||||||||||
Sbjct 460 A-TCTCCA-C-TC-AAACCTCT-TCAGTTAT-TG-CTGAAGCTGGAAATGAAGTCCAAGA 512
Query 237 AGTAGCTCAGTGTAGCAAATCAAGTGATGTTTCTAAGGAAGTTATTCAAGGAGGAGTGAA 296
|||||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 513 AGTAGCTCAGTGTAGCAAATCAAGTGATGTTTCTAAGGAAGTTATT----GA--AG-G-A 564
Query 297 TGAGACGGCCTCAGTTGTTTCAGCTGGAAATCATTCAGTTTCTCTTGAGGTTGGGGCTTC 356
||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 565 -GAGACAGCTTCAGTTGTTTCAGCTGGAAAGCATTCAGTTTCTCTTGAGGTTGGGGCTTC 623
Query 357 TTTGATTAAGTTCATTAGAGGGAAAGAAGGAACTACACAGATGAAACTTGAAGAGGAAAT 416
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 624 TTTGATTAAGTTCATTAGAGGGAAAGAAGGAACGACGCAGATGAAACTTGAAGAGGAAAT 683
Query 417 GGGAGTGAAGATCATTCTTCCATCATCAAGGGACGAAGATCATATCAGCATTGAAGGCGG 476
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 684 GGGAGTGAAGATCATTCTTCCATCATCAAGGAACAAAGATCATATCAGCATTGAAGGCGG 743
Query 477 TTCAGTGGATTGTGTGACTAAAGCTTCAGAAAGAATAGCAACCATTATCGATGAGGTTGT 536
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 744 TTCAGTGGATTGTGTGACTAAAGCTTCAAAAAGAATAGCAACCATTATCGATGAGGTTGT 803
Query 537 AAGGAGTCCGAGTCTCGACTACTCACACTTTGTATCACTTCCATTAGCCATACATCCTGA 596
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AAGGAGTCCAAGTCTCGACTACTCACACTTTGTATCACTTCCATTAGCCATACATCCTGA 863
Query 597 GTTAGTGGACAAGCTAGTGAATTTTCAGAACTCTATCCTCGGGATCCATAGCATAGCTAG 656
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 864 GTTAGTGGACAAGCTAGTGAATTTTCAGAATTCTATCCTCGGGATCCATAGCATAGCTAG 923
Query 657 TGATAAGCAAGACGACCAAGCTAATAGAGCAACCACAAGTGTGGCAGTTGATCTAAAAGC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TGATAAGCAAGACGACCAAGCTAATAGAGCAACCACAAGTGTGGCAGTTGATCTAAAAGC 983
Query 717 TAATAGTGAAACAAACCAGGTCAATGTGGGTATCAAGAGCATACCAATTGTCAGTTACCC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TAATAGTGAAACAAACCAGGTCAATGTGGGTATCAAGAGCATACCAATTGTCAGTTACCC 1043
Query 777 GCCTAAGGCCAAATCAAAGTCATCTACTTTATTGGACTTGGGAATTGAAAAGTCCATATT 836
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1044 GCCTAAGGCCAAATCAAAGTCATCTACTTTATTGGACTTAGGAATTGAAAAGTCCATATT 1103
Query 837 TATTAAGCCAAGTACTTTTCACTTGACTGTGGTTATGCTGAAGTTATGGAACAAAGATCG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TATTAAGCCAAGTACTTTTCACTTGACTGTGGTTATGCTGAAGTTATGGAACAAAGATCG 1163
Query 897 TGTCAATGCAGCGCGTGATGTTCTGAAGAGTATATCTCCTAGTGTGATGGATGCTTTGGA 956
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1164 TGTCAATGCAGCGTGTGATGTTCTGAAGAGTATATTTCCTAGTGTGATGGATGCTTTGGA 1223
Query 957 TAACAAACCAGTATTCATTAGACTTAAAGGATTGGATTGTATGAGAGGACCATTAGACAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TAACAAACCAGTATTCATTAGACTTAAAGGATTGGATTGTATGAGAGGACCATTAGACAA 1283
Query 1017 GACTCGTGTTCTCTATGCTCCTGTTGAAGAAATTGGTGATGAAGGCCGGCTTTTACGTGC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 GACTCGTGTTCTCTATGCTCCTGTTGAAGAAATTGGTGATGAAGGCCGGCTTTTACGTGC 1343
Query 1077 TTGTCGTATCCTAATTTTTAAAGTTATTACTGATGCATTTGTGAAAGCTGGGCTTGTTCT 1136
||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 1344 TTGTC--A----A---------GTTATTACTGATGCATTTGTGAAAGCTGGGCTTGTTCT 1388
Query 1137 CGAGAAAGATGCAAAGCAAAGCTTGAAGCTGCATGTGACCGTGATGAATGCGAGGCACAG 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 CGAGAAAGATGCAAAGCAAAGCTTGAAGCTGCATGTGACCGTGATGAATGCGAGGCACAG 1448
Query 1197 GAAAAGGAGAAAGAACAATAAGAAGAAGATGGAGACGTTTGATGCAAGAGAGATACACAA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 GAAAAGGAGAAAGAACAATAAGAAGAAGATGGAGACGTTTGATGCAAGAGAGATACACAA 1508
Query 1257 ACAGTTTGGAAACGAAGACTGGGGAGAATATCTGATCCGAGAAGCTCATCTCTCACAGCG 1316
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1509 ACAGTTTGGAAACGAAGACTGGGGAGAATATCTGATCCAAGAAGCTCATCTCTCACAGCG 1568
Query 1317 TTTTGTGTTCGACCAGAACGGTTTTTACCGTTGCTGTGCTTCCCTACCATTTCCAGGAGA 1376
||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 1569 TTTTGTGTTCGACCAGAACGGTTATTACCGTTGCTGTGGTTCAATACCATTTCCAGGAGA 1628
Query 1377 ACACACAGCCTGA 1389
||| | |||||||
Sbjct 1629 ACAGAGAGCCTGA 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5