BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg341749 Length=1389 Score E Sequences producing significant alignments: (Bits) Value AT3G16230.2 | Symbols: | Predicted eukaryotic LigT | chr3:5500... 2025 0.0 > AT3G16230.2 | Symbols: | Predicted eukaryotic LigT | chr3:5500178-5503545 FORWARD LENGTH=1883 Length=1883 Score = 2025 bits (1096), Expect = 0.0 Identities = 1302/1393 (93%), Gaps = 47/1393 (3%) Strand=Plus/Plus Query 1 ATGTTAGCTTGCAGGACTCTGTTTAGGATTGATCGTGTGTTTGGGGTTACGAGTAGATGT 60 ||||| |||| ||||||||||||||||||||| ||||| |||||| |||||||||||||| Sbjct 292 ATGTTCGCTTACAGGACTCTGTTTAGGATTGACCGTGTATTTGGGTTTACGAGTAGATGT 351 Query 61 TTTCTATCGAAAACGGAATCTTTAAGTATCTTGAGCTTTAGGGGAAGTGAGAAGAGTGCC 120 |||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 352 TTTCAATCGAAACCGGAATCTTTTAGTATCCTGAGCTTTAGGGGAAGTGAGAAGAGTGCC 411 Query 121 ATGGATGGAT-TCAAGAAGCAGAAGATGTTTAATCGTATGATCCATCCCGGTTTTGA--A 177 |||||||||| | ||||||||||||||| | ||| || | | | || || Sbjct 412 ATGGATGGATAT-AAGAAGCAGAAGATGGTAAAT-TTA-G-T--GT---GG---AGACCC 459 Query 178 AGTTTCCACCTTCTGTGGCTTTCTCA-TGATGAGACAGAAGCTGGAAATGAAGTCCAAGA 236 | | |||| | || || | ||| | || | | ||||||||||||||||||||||| Sbjct 460 A-TCTCCA-C-TC-AAACCTCT-TCAGTTAT-TG-CTGAAGCTGGAAATGAAGTCCAAGA 512 Query 237 AGTAGCTCAGTGTAGCAAATCAAGTGATGTTTCTAAGGAAGTTATTCAAGGAGGAGTGAA 296 |||||||||||||||||||||||||||||||||||||||||||||| || || | | Sbjct 513 AGTAGCTCAGTGTAGCAAATCAAGTGATGTTTCTAAGGAAGTTATT----GA--AG-G-A 564 Query 297 TGAGACGGCCTCAGTTGTTTCAGCTGGAAATCATTCAGTTTCTCTTGAGGTTGGGGCTTC 356 ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 565 -GAGACAGCTTCAGTTGTTTCAGCTGGAAAGCATTCAGTTTCTCTTGAGGTTGGGGCTTC 623 Query 357 TTTGATTAAGTTCATTAGAGGGAAAGAAGGAACTACACAGATGAAACTTGAAGAGGAAAT 416 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 624 TTTGATTAAGTTCATTAGAGGGAAAGAAGGAACGACGCAGATGAAACTTGAAGAGGAAAT 683 Query 417 GGGAGTGAAGATCATTCTTCCATCATCAAGGGACGAAGATCATATCAGCATTGAAGGCGG 476 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 684 GGGAGTGAAGATCATTCTTCCATCATCAAGGAACAAAGATCATATCAGCATTGAAGGCGG 743 Query 477 TTCAGTGGATTGTGTGACTAAAGCTTCAGAAAGAATAGCAACCATTATCGATGAGGTTGT 536 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 744 TTCAGTGGATTGTGTGACTAAAGCTTCAAAAAGAATAGCAACCATTATCGATGAGGTTGT 803 Query 537 AAGGAGTCCGAGTCTCGACTACTCACACTTTGTATCACTTCCATTAGCCATACATCCTGA 596 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804 AAGGAGTCCAAGTCTCGACTACTCACACTTTGTATCACTTCCATTAGCCATACATCCTGA 863 Query 597 GTTAGTGGACAAGCTAGTGAATTTTCAGAACTCTATCCTCGGGATCCATAGCATAGCTAG 656 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 864 GTTAGTGGACAAGCTAGTGAATTTTCAGAATTCTATCCTCGGGATCCATAGCATAGCTAG 923 Query 657 TGATAAGCAAGACGACCAAGCTAATAGAGCAACCACAAGTGTGGCAGTTGATCTAAAAGC 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 924 TGATAAGCAAGACGACCAAGCTAATAGAGCAACCACAAGTGTGGCAGTTGATCTAAAAGC 983 Query 717 TAATAGTGAAACAAACCAGGTCAATGTGGGTATCAAGAGCATACCAATTGTCAGTTACCC 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 984 TAATAGTGAAACAAACCAGGTCAATGTGGGTATCAAGAGCATACCAATTGTCAGTTACCC 1043 Query 777 GCCTAAGGCCAAATCAAAGTCATCTACTTTATTGGACTTGGGAATTGAAAAGTCCATATT 836 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1044 GCCTAAGGCCAAATCAAAGTCATCTACTTTATTGGACTTAGGAATTGAAAAGTCCATATT 1103 Query 837 TATTAAGCCAAGTACTTTTCACTTGACTGTGGTTATGCTGAAGTTATGGAACAAAGATCG 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1104 TATTAAGCCAAGTACTTTTCACTTGACTGTGGTTATGCTGAAGTTATGGAACAAAGATCG 1163 Query 897 TGTCAATGCAGCGCGTGATGTTCTGAAGAGTATATCTCCTAGTGTGATGGATGCTTTGGA 956 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1164 TGTCAATGCAGCGTGTGATGTTCTGAAGAGTATATTTCCTAGTGTGATGGATGCTTTGGA 1223 Query 957 TAACAAACCAGTATTCATTAGACTTAAAGGATTGGATTGTATGAGAGGACCATTAGACAA 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1224 TAACAAACCAGTATTCATTAGACTTAAAGGATTGGATTGTATGAGAGGACCATTAGACAA 1283 Query 1017 GACTCGTGTTCTCTATGCTCCTGTTGAAGAAATTGGTGATGAAGGCCGGCTTTTACGTGC 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1284 GACTCGTGTTCTCTATGCTCCTGTTGAAGAAATTGGTGATGAAGGCCGGCTTTTACGTGC 1343 Query 1077 TTGTCGTATCCTAATTTTTAAAGTTATTACTGATGCATTTGTGAAAGCTGGGCTTGTTCT 1136 ||||| | | |||||||||||||||||||||||||||||||||||||| Sbjct 1344 TTGTC--A----A---------GTTATTACTGATGCATTTGTGAAAGCTGGGCTTGTTCT 1388 Query 1137 CGAGAAAGATGCAAAGCAAAGCTTGAAGCTGCATGTGACCGTGATGAATGCGAGGCACAG 1196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1389 CGAGAAAGATGCAAAGCAAAGCTTGAAGCTGCATGTGACCGTGATGAATGCGAGGCACAG 1448 Query 1197 GAAAAGGAGAAAGAACAATAAGAAGAAGATGGAGACGTTTGATGCAAGAGAGATACACAA 1256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1449 GAAAAGGAGAAAGAACAATAAGAAGAAGATGGAGACGTTTGATGCAAGAGAGATACACAA 1508 Query 1257 ACAGTTTGGAAACGAAGACTGGGGAGAATATCTGATCCGAGAAGCTCATCTCTCACAGCG 1316 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1509 ACAGTTTGGAAACGAAGACTGGGGAGAATATCTGATCCAAGAAGCTCATCTCTCACAGCG 1568 Query 1317 TTTTGTGTTCGACCAGAACGGTTTTTACCGTTGCTGTGCTTCCCTACCATTTCCAGGAGA 1376 ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| Sbjct 1569 TTTTGTGTTCGACCAGAACGGTTATTACCGTTGCTGTGGTTCAATACCATTTCCAGGAGA 1628 Query 1377 ACACACAGCCTGA 1389 ||| | ||||||| Sbjct 1629 ACAGAGAGCCTGA 1641 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68423342835 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5