BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341755
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51171.1 | Symbols: | F-box and associated interaction doma... 835 0.0
AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5... 499 2e-140
> AT3G51171.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:19010805-19012008 FORWARD LENGTH=1204
Length=1204
Score = 835 bits (452), Expect = 0.0
Identities = 920/1136 (81%), Gaps = 72/1136 (6%)
Strand=Plus/Plus
Query 17 CGCTTCCGTGCGAATTGGAGGAAGAAATACTCTCTCGGCTTCCA-CCTTTATCTCTTGCT 75
||||||| || || | |||||||| ||||| ||||| ||| || || |||||||| |
Sbjct 59 CGCTTCCATGGGAGCTAGAGGAAGATATACTGTCTCGACTTGCAGCC-CAATCTCTTGTT 117
Query 76 CGATTCAGATCCGTTTGCAAACAG-TGGAATGCTATTTGCAATGAGAATAGGTTCATCAA 134
|||||||||||||||||||||| | |||||| | ||| | |||| || || ||||||||
Sbjct 118 CGATTCAGATCCGTTTGCAAAC-GATGGAATTATCTTTTCGATGAAAAGAGTTTCATCAA 176
Query 135 TAACCACTTCGCTCGCGCTCGTCCTCAGTTCATCTTCATAACCAATTCCAATATTTATTC 194
|||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 177 AAACCACTTCGCTCGTGCTTGTCCTCAGTTCATCTTCATGACCGATTCCAATATTTATTC 236
Query 195 GATAGAGATTATCAGTCTCGACGGGGTTGATCCAACGATTAAGTTGCGAGAGCTACCCTC 254
||||||||| ||| |||||||||| |||||||||||||||||||| || | |||| |||
Sbjct 237 GATAGAGATCATCGGTCTCGACGGCGTTGATCCAACGATTAAGTTACGTGTGCTAGACTC 296
Query 255 CTCTCGTA-CCGCTTACCGTGAATTG-TATTTGGATTACATAACCATCACTACTTGCGAT 312
|||| ||| || |||||||||| | | |||| | |||||||||||||||| ||||||||
Sbjct 297 CTCTGGTATCC-CTTACCGTGACTGGAAATTT-GCTTACATAACCATCACTGCTTGCGAT 354
Query 313 -GGTCTCTTGTTTTGTAACTATTCGGATTA-TCCCAAGGTTACAGCACTCTGGAATCCGT 370
||| ||||||||||||||| || || || ||| |||| ||||| | ||||||||||
Sbjct 355 GGGT-TCTTGTTTTGTAACTCTT-GGGCTAGTCCTAAGGGGACAGCTTTTTGGAATCCGT 412
Query 371 GGTTGAAACAAGTTAAATGGATCGAGTGCAATGATAAATATTTTGATGTCTCTGGCGTGG 430
|||||||||| |||||||||||||||| | | |||||| ||| |||||| |||| | |
Sbjct 413 GGTTGAAACAGGTTAAATGGATCGAGTACGAGGATAAAGGTTTCAATGTCTGTGGCTTAG 472
Query 431 GATACGATAATACTAGACCCGAAAAGGTTTACAAGATCTTAGGGTCTTT--TATAT---- 484
||||||||||||||||| || |||||||||||| ||||| |||| ||| | | |
Sbjct 473 GATACGATAATACTAGAGACGGAAAGGTTTACAAAATCTTGGGGTATTTAATGTGTCGCC 532
Query 485 C------T--G-G---TT--GTA-AAGTCGAGAGAGTTGCGATCTACGAGTGTGCCTCTC 529
| | | | || ||| | | ||||||||||||||||||| ||||||||||
Sbjct 533 CTGAAGATGGGAGCTCTTACGTATACCACCAGAGAGTTGCGATCTACGACTGTGCCTCTC 592
Query 530 ACGCGTTCAAGTCTATTG-ATTCATCTAACGAGCAAT-GCCCCTTAAGCC-AAGTTAAAC 586
|||||||||||| ||||| | | ||| ||| || | | | || ||| || | |||| ||
Sbjct 593 ACGCGTTCAAGTTTATTGAAAT-ATCGAACAAGGACTGGTTCC-TAA-CCGATGTTACAC 649
Query 587 GATTCAGTGTGTCCTTGAACGGAAATCTCTATTGGCGTACTCGTATTCCCCACACTTTA- 645
||||||||||||| |||||||||||||||||||||| | ||| ||||||| |||| | |
Sbjct 650 GATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGCTTTCTCCTATTCCCAACAC-TGAT 708
Query 646 GACTTT-TACATCCGAA-GCTTTGATTTCTCGAGGGATATATTCAAACACTTTTGTCTCC 703
|||||| | ||||| || | ||||||||||| ||||| |||| ||||| ||||||||| |
Sbjct 709 GACTTTCT-CATCC-AATGTTTTGATTTCTCTAGGGAGATATGCAAACCCTTTTGTCTTC 766
Query 704 TTCCGTGCCGCG-AGAATCAT--TTTCGCGATGTACTTGTTCTCGGAGTTTACAAGGGAG 760
|||| || || | || | || ||| |||| |||||| | ||||| || |||||
Sbjct 767 TTCCTTGTCG-GAAGTTTGATGCTTT--CGATTTACTTG---T--AAGTTTTCAGGGGAG 818
Query 761 ATAGGTTGTCCTTGTTAAAGCAATGTTATGTGACAAGG-AGCGTTGAGATTTGGGTTACG 819
||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 819 ATAGGTTATCCTTGTTAAAGCAATGTTATAAGACAAGGAAG-GTTGAGATTTGGGTTACG 877
Query 820 AAGAAGAAGATTG--A-TAGTAACAACAATGGAACAGACGAAGTTGTGTGGATTAAGTTG 876
||||| ||||||| | |||||||||||||||| |||||||||||||||||||| | |||
Sbjct 878 AAGAATAAGATTGATACTAGTAACAACAATGGATCAGACGAAGTTGTGTGGATTCACTTG 937
Query 877 TTGACTTTGCCAACAAATAACTTGCCAAACTTATATAAT-AAGTGTTATGGCATTAGTTA 935
||||| |||| | ||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 938 TTGACGTTGCTACCAAATAACTTGCCAAACTTAT-TTATCGAGTGTTATGGCATTAGTTA 996
Query 936 CTTCATCTATGACAAGACCACCCTAATCATGTGTTGTGGTGAAGATGATGG-TGGAACGC 994
|||||||||||||||||||||| | ||||| | ||||| ||| || || | | ||
Sbjct 997 CTTCATCTATGACAAGACCACCTTCATCATTTATTGTGCTGACGA-GAACACTT-AT-GC 1053
Query 995 GGGCTTTCATCTACATATTGTCAGGAGAGATTTGTTCAAGAAGATTCCAATTGATTCTGG 1054
|| ||| |||||| |||||||||| |||||||| |||||||| || |||||| |
Sbjct 1054 GG-CTTGCATCTA--TATTGTCAGGGGAGATTTGCTCAAGAAGTTTGTAATTGACACCAT 1110
Query 1055 GGTTTTCCGGTGTTGTCA-CTGTCTTTATGCTCCGAATTTTATCCCGGTTCCTTTA 1109
||||||| | |||| | | |||| |||||||||| ||||||||||| ||||||||
Sbjct 1111 GGTTTTCTGTTGTTAT-AGCTGTGTTTATGCTCCCAATTTTATCCCCCTTCCTTTA 1165
> AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5634542
FORWARD LENGTH=1050
Length=1050
Score = 499 bits (270), Expect = 2e-140
Identities = 603/756 (80%), Gaps = 54/756 (7%)
Strand=Plus/Plus
Query 383 TTAAATGGATCGAGTGCAATG-ATAAATATTTTGATGTCTCTGGCGTGGGATACGATAAT 441
||||||||||||||| | | | ||||| ||| |||| | |||||| ||||||||||||
Sbjct 314 TTAAATGGATCGAGTACGA-GAATAAAGGTTTCAATGTATGTGGCGTAGGATACGATAAT 372
Query 442 ACTAGACCCGAAAAGGTTTACAAGATCTTAGG-GTCTTT-TA-TAT---C-TG--G-TTG 491
||||| || || ||||||||||| ||||| || || ||| | | | | || | |
Sbjct 373 ACTAGGCCTGAGAAGGTTTACAAAATCTT-GGAGTATTTAGAGTGTCGCCGTGAAGAGAG 431
Query 492 -T--AA---A-G-T-CGAGAGAGTTGCGATCTACGAGTGTGCCTCTCACGCGTTCAAGTC 542
| || | | | | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 432 CTCGAACGCATGCTACCAGAGAGTTGCGATCTACGAGTGTGCCTCTCATGCGTTCAAGTT 491
Query 543 TATTGATTCATCTAACGAGCAATGCCCCTTAAGCCAAGTTAAACGATTCAGTGTGTCCTT 602
||||||| | |||||| || || | ||||| | ||| |||||| |||||||| |||
Sbjct 492 TATTGATACTTCTAACAAGGTCTGGTTCATAAGCGATGTTCAACGATACAGTGTGTGCTT 551
Query 603 GAACGGAAATCTCTATTGGCGTACTCGTATTCCCCACACTTTAGACTTTTACATCCGAAG 662
|||||||||||||||||||| | || | || | | |||||| ||||| | |
Sbjct 552 GAACGGAAATCTCTATTGGC-T-TTC-T-TT----TGA---T-GACTTTCGCATCCTATG 599
Query 663 CTTTGATTTCTCGAGGGATATATTCAAACACTTTTGTCTCCTTCCGTGCCGCG-AGAATC 721
|||||||||||||||||| ||| |||||| |||||||||||||||||| || | || |
Sbjct 600 CTTTGATTTCTCGAGGGAGATAGTCAAACCCTTTTGTCTCCTTCCGTGTCG-GAAGTTTG 658
Query 722 AT-TTTCGCGATGTACTTGTTCTCGGAGTTTACAAGGGAGATAGGTTGTCCTTGTTAAAG 780
|| | ||||| |||||| ||| ||||| ||||||||||||||| |||||||||||
Sbjct 659 ATAAAT-GCGATTTACTTGCCCTCCAAGTTTTCAAGGGAGATAGGTTATCCTTGTTAAAT 717
Query 781 CAATGTTATGTGACAAGGAGCG-TTGAGATTTGGGTTACGAAGAAGAAGATTGA---TAG 836
||||||| | |||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 718 CAATGTTGTAAGACAAGGA-CGATTGAGATTTGGGTTACGAAGAAGAAGATTGATTCTAG 776
Query 837 TAACAACAATGGAACAGACGAAGTTGTGTGGATTAAG-TTGTTGACTTTGCCAACAAATA 895
||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 777 TAACAACAATGGATCAGACGAAGTTGTGTGGATT-AGCTTGTTGACTTTGCCACCAAATA 835
Query 896 ACTTGCCAAACTTATATAATAAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCA 955
||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 836 ACTTGCCAAACTTATTTATTGTGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCA 895
Query 956 CCCTAATCATGTGTTGTGGTGAAGATGATGG-TGGAACGCGGGCTTTCATCTACATATTG 1014
|| ||||||| | ||||| || || || | | |||| ||| |||||| |||
Sbjct 896 CCTTAATCATTTATTGTGAAGACGA-GAACACTTCA--GCGG-CTTGCATCTA--TATCA 949
Query 1015 TCAGGAGAGATTTGTTCAAGAAGATTCCAATTGATTC-TGGGGTTTTCCGGTGTTGTCAC 1073
||||| | ||||||||||||||| || ||||||||| | | ||| | |||| ||||
Sbjct 950 TCAGGGGGGATTTGTTCAAGAAGTTTGAAATTGATTCCTCTGCTTT-CTTTTGTTATCAC 1008
Query 1074 TGTCTTTATGCTCCGAATTTTATCCCGGTTCCTTTA 1109
||| |||||||||| ||||||||||| ||||||||
Sbjct 1009 TGTGTTTATGCTCCCAATTTTATCCCTCTTCCTTTA 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5