BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341756
Length=2841
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16260.1 | Symbols: TRZ4 | tRNAse Z4 | chr3:5509374-5513204 ... 4479 0.0
AT1G52160.1 | Symbols: TRZ3 | tRNAse Z3 | chr1:19420715-1942443... 1007 0.0
> AT3G16260.1 | Symbols: TRZ4 | tRNAse Z4 | chr3:5509374-5513204
FORWARD LENGTH=2938
Length=2938
Score = 4479 bits (2425), Expect = 0.0
Identities = 2690/2818 (95%), Gaps = 17/2818 (1%)
Strand=Plus/Plus
Query 34 CCTCAAAACCTAAGCCTTTTCGGATTTTCTCCACTCAAGtcttcttctttcgcgcttttt 93
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||
Sbjct 42 CCTCAAAACCTAAGCCTTTTCGGATTTTCTCCTCTCAAGTCTTCTTCGTTCGCTCTTATT 101
Query 94 ctcagacccttttctctctacccaccaatcttcgcttcttcttcCCCGAG-TCCGAGTCG 152
|||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 102 CTCAGACCCTTTTCTCTCTACCCACCAATCTTCGCTTCTTCTTCTCCG-GCTCCGAGTCG 160
Query 153 TCGTCCTCCTCGCACCGCCGGTTACCGTCGCAGTGGCCCTTCTCATCCTCCAAGACGCAA 212
||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||
Sbjct 161 TCGTCCTCCTCGCACCGCCGGTTACCGTCGCAGTGGCCC-T-TC-TCCTCCGAGACGCAA 217
Query 213 GTGGAGTAGTTTAGAAGAGCAGAAGAGAAAAGGTAGGTCTCCGATGGAGAAAGAGAAAGC 272
||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 218 ATGGAGTAGTTTCGAGGAGCAGAAGAGAAAAGGTAGGTCTCCGATGGAGAAAGATAAAGC 277
Query 273 TAGTAGTTTTAATCATTCTTCTGATTCTTTCGAGTTTAATAAGAGAAGAGCTGAGGGATT 332
|| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 TATTAGCTTTAATCACTCTTCTGATTCTTTCGAGTTTAATAAGAGAAGAGCTGAGGGATT 337
Query 333 GGATAAGATCGATAAGCCTAAGAAGAATCTCAAGAGGAATACTCGCACCCTTAATCCTAC 392
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 338 GGATAAGGTCGATAAGCCTAAGAAGAATCTCAAGAGGAATACTCGCACCCTTAACCCTAC 397
Query 393 CAACACCATTGCCTATGTTCAGATCCTTGGGACTGGAATGGATACACAGGATACATCACC 452
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 398 CAATACCATCGCCTATGTTCAGATCCTTGGGACTGGAATGGATACACAGGATACGTCACC 457
Query 453 TTCTGTATTACTCTTCTTTGATAAACAAAGATTCATCTTTAATGCTGGAGAGGGGTTGCA 512
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 458 TTCTGTATTACTCTTCTTTGACAAACAAAGATTCATCTTTAATGCTGGAGAGGGGTTGCA 517
Query 513 ACGTTTTTGTACAGAACATAAAATTAAGTTATCAAAGGTAGATCATATCTTTTTGTCTCG 572
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 518 ACGTTTTTGTACTGAACATAAAATTAAGTTATCAAAGGTAGATCATATATTTTTGTCTCG 577
Query 573 TGTGTGCTCAGAGACAGCAGGTGGGCTTCCAGGTCTTCTACTGACTCTAGCTGGTATCGG 632
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 578 TGTGTGCTCAGAGACAGCAGGCGGGCTTCCAGGTCTTCTACTGACCCTAGCTGGTATCGG 637
Query 633 TGAAGAAGGACTATCCGTAAACGTGTGGGGCCCTTCGGATCTTAAGTATTTAGTTGATGC 692
||| ||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 638 GGAACAAGGACTATCCGTCAACGTATGGGGTCCTTCAGATCTTAAGTATTTGGTTGATGC 697
Query 693 TATGAGGTCATTTATTCCTCGTGCTGCAATGGTTCATACAAGAAGTTTTGGTCCATCGTT 752
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 698 TATGAGGTCATTTATCCCTCGTGCTGCCATGGTTCATACAAGAAGTTTTGGTCCATCATT 757
Query 753 GAATACATCTGACTCCACGCCTCAGAGTGGCTTAAGTAAACCCAAAGATGATGCCTATGT 812
||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 758 GAATATATCTGACTCTGCGCCTCAGATTGGCTTAAGTAAACCCAAAGATGATGCCTATGT 817
Query 813 TCTTGTGGATGACGAAGTTGTGAAAATCTCCGCCATTCTCTTAGAACCAAGTCACTTAGA 872
||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 818 TCTTGTGGATGACGAAGTTGTGAAAATATCCGCCATTCTCCTAGAACCAAGTCGCTTAGA 877
Query 873 AGAATCCGGCAGCAAACCTGGTGAAACGGCAGTTATATATGTATGTGAATTACCTGAAAT 932
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 878 GGAATCTGGCAGCAAACCTGGTGAAACAGCAGTTATATATGTATGTGAATTACCTGAAAT 937
Query 933 CAAAGGAAAGTTTGACCCAAAGAAGGCCATGGCTCTTGGACTGAGAGCTGGTCCAAAATA 992
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 938 CAAAGGAAAGTTTGATCCAAAGAAGGCCATGGCTCTTGGATTGAGAGCTGGTCCAAAGTA 997
Query 993 CAGTTATCTTCAATCTGGACAGTCAGTCAAGTCAGATTTTAAAGATATTACGGTTCATCC 1052
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 CAGTTATCTTCAGTCTGGACAGTCAGTCAAGTCAGATTTTAAAGATATTACGGTTCATCC 1057
Query 1053 GAGTGATGTGATGGGACCTTCAGTTCCTGGTCCTGTTGTTTTGCTTGTGGACTGTCCAAC 1112
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1058 GAGTGATGTGATGGGACCTTCAGTTCCTGGTCCTGTTGTTTTGCTTGTGGATTGTCCAAC 1117
Query 1113 AGAGTCACATGCCGAGGAACTGCTATCTATACCGTCTATGAAAAGTTATTATTCATGTCT 1172
|||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 1118 AGAGTCACATGCCGAGGAACTGCTATCTATCCCGTCTATGAAGACTTATTATTCATGTCT 1177
Query 1173 TGACAATTCAACAGATGGAGCTAAGCTTGTTAATTGTATTATTCATCTAAGTCCAGCTTC 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TGACAATTCAACAGATGGAGCTAAGCTTGTTAATTGTATTATTCATCTAAGTCCAGCTTC 1237
Query 1233 TGTAACAAATAGTTCTACATACCAAAGCTGGATGAAGAGATTCCGTTCTGCCCAGCACAT 1292
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1238 TGTAACAAATAGTTCTACATACCGAAGCTGGATGAAGAGATTCCATTCTGCCCAGCACAT 1297
Query 1293 TCTCGCTGGACATGAAGCGAAGAATATGGAGTTTCCAATCCTGAGAGCCAGTTCTAGAAT 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TCTCGCTGGACATGAAGCGAAGAATATGGAGTTTCCAATCCTGAGAGCCAGTTCTAGAAT 1357
Query 1353 CACAGCCAGACTTAACTATTTATGCCCACAGTTCTTCCCTGCGCCTGGATTTTGGTCTCC 1412
|||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1358 CACAGCCAGACTTAACTATTTATGTCCACAGTTCTTCCCAGCTCCTGGATTTTGGTCTCA 1417
Query 1413 TCAACATGTTAATAACTCAATAAACTCCACTTCTTTGAGCAAGTGCTTCGATTCGAATCT 1472
|||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1418 TCAACATGATAATAACTCGATAAACCCCACTTCTTTGAGCAAGTGCTTCGATTCGAATCT 1477
Query 1473 TGGTGAAAGCATTTCCGCTGAAAATCTCCTCAAGTTCACTTTGCGTCCACATAGTAATCT 1532
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1478 TGGTGAAAGCATTTCTGCTGAAAATCTCCTCAAGTTCACTTTGCGTCCACATGGTAATCT 1537
Query 1533 TGGGGTAGACAGAACTTGTATCCCTAGTCGATTGACATCCTTACGAGTGATGGATGAGCT 1592
||||||||||||| || |||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 1538 TGGGGTAGACAGATCTAGTATCCCTAGTCGATTAACAGCTTTACGAGTGATGGATGAGCT 1597
Query 1593 TCTTTCAGAAATTCCTGAGATCAGCAGTAAGACCGAAGAAATCAAGCGGTTATGGAATGG 1652
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1598 TCTTTCAGAAATTCCTGAAATCAGCAGTAAGACCGAAGAAATCAAGCAGTTATGGAATGG 1657
Query 1653 ACAACACAACAAGATGATGATCGAAGAGCCATGGCTGGGTGAAAGCACTGTTCCAAGCTG 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 ACAACACAACAAGATGATGATCGAAGAGCCATGGCTGGGTGAAAGCACTGTTCCAAGCTG 1717
Query 1713 TCTTGAAAACATTAGAAGAGATGACATGGAGATAGTTCTTTTGGGCACTGGTTCCTCCCA 1772
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1718 TCTTGAAAACATTAGAAGAGACGACATGGAGATAGTTCTTTTGGGCACTGGTTCCTCCCA 1777
Query 1773 ACCCTCAAAATACCGAAATGTCACCGCAATTTACGTCGACCTATTCTCTAGAGGCAGTAT 1832
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1778 ACCCTCAAAATACCGAAATGTCACGGCAATTTACATCGACCTATTCTCTAGAGGCAGTAT 1837
Query 1833 TCTCTTGGATTGTGGGGAAGGTACCTTAGGCCAGCTTAAACGGAGATATGGTTTAGAAGG 1892
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1838 TCTCTTGGATTGTGGGGAAGGTACCTTAGGCCAGCTTAAACGAAGATATGGTTTAGAAGG 1897
Query 1893 AGCTGATGAAGCAGTCAGAAACTTGAGATGTATATGGATCTCTCACATCCATGCTGATCA 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 AGCTGATGAAGCAGTCAGAAACTTGAGATGTATATGGATCTCTCACATCCATGCTGATCA 1957
Query 1953 CCATACGGGTCTTGCAAGAATCCTTGCTCGTAGACGTGAGCTTCTGAAAGGAGTGGCTCA 2012
|||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 1958 CCATACGGGTCTTGCAAGAATCCTTGCTCGCAGACGTGAGCTTTTGAAAGGATTGGCTCA 2017
Query 2013 TGAGCCAGCAATTGTGGTTGGACCGAGACCGCTTAAGAACTTTCTCGATGCATATCAAAG 2072
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2018 TGAGCCAGCAATTGTGGTTGGACCGAGATCGCTTAAGAACTTTCTCGATGCATATCAAAG 2077
Query 2073 ACTCGAGGATTTAGATATGGAGTTTCTTGATTGCAGGAACACCACAACAACTTCTTGGGC 2132
||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 2078 ACTTGAGGATTTAGATATGGAGTTTCTCGACTGCAGGAACACCACAACAACATCTTGGGC 2137
Query 2133 TTCTCAAGAAACCACCCGCCCTGAGAAAAATACCAATAGCGGTAATGCAGAGGGTTCTTT 2192
|||| |||||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 2138 TTCTGTAGAAACCAGCCGCCCTGAGAAAAATACCAGTAGCGGCAATGCAGAGGGTTCTTT 2197
Query 2193 GTTCAGTAAAGGAAGTCCAATGCAGAGTATTTATAAAAGATCAAGTACCCCACTGACCGA 2252
||||||||||||||||| |||||||||||| ||||||||| | || | ||||||||| ||
Sbjct 2198 GTTCAGTAAAGGAAGTCTAATGCAGAGTATATATAAAAGACCGAGCAGCCCACTGACAGA 2257
Query 2253 CAATTCTTCAGCTTTACCATTCTTGAAGAAACTGAAAAATGTCCTAGGCGAAATGGGTTT 2312
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 2258 CAATTCTTCAGCTTTACCATTCTTGAAGAAACTGAAAAAAGTCCTCGGCGAAATGGGGTT 2317
Query 2313 GGAGGATTTGATTAGCTTTCCTGTTGTGCATTGCCCTCAAGCCTTTGGGGTTGTTGT-AA 2371
|||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 2318 GGAGCATTTGATTAGCTTTCCTGTTGTGCATTGCCCTCAAGCCTTTGGGGTT-TCGTTAA 2376
Query 2372 AAGCAGC-GAAAAGAAAAAACATTGCCGGAGATGAGATTCCTGGGTGGAAAATGGTTTAC 2430
||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2377 AAGCAGCAGAAA-GAAAAAACATTGCCGGAGATGAGATTCCGGGGTGGAAAATGGTTTAC 2435
Query 2431 TCAGGTGACACAAGGCCTTGTCCTGAGATGGTTGAAGCTTCAAAAGGAGCAACTGTTCTT 2490
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2436 TCGGGAGACACAAGGCCTTGTCCTGAGATGGTTGAAGCTTCAAAAGGAGCAACAGTTCTT 2495
Query 2491 ATACATGAGGCGACATTTGAGGATGCGTTGGTAGAAGAAGCTGTGGCTAAGAATCATAGC 2550
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2496 ATACATGAGGCGACGTTTGAGGATGCGTTGGTAGAAGAAGCTGTGGCTAAAAACCATAGC 2555
Query 2551 ACAACTAAAGAAGCAATCAACGTTGGATCTTCAGCAGGTGTATACCGAACAGTACTGACA 2610
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2556 ACAACTAAAGAAGCAATCAAAGTTGGATCTTCAGCAGGTGTATACCGAACCGTACTGACA 2615
Query 2611 CATTTTAGCCAGAGATACCCAAAGATCCCGGTGATTGACGAGTCGCATATGCACAATACA 2670
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2616 CATTTTAGCCAGAGATACCCAAAGATCCCGGTGATTGACGAATCACATATGCACAATACA 2675
Query 2671 TGCATTGCCTTTGATATGATGAGTATAAACATGGCGGATCTACATGTCCTTCCAAAGATT 2730
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2676 TGCATTGCCTTTGATATGATGAGTATAAACATGGCGGATTTACATGTGCTTCCAAAGATT 2735
Query 2731 TTACCTTACTTCAAAACTCTATTCAGAAACCAAGTGGTTgaagaagaagaagaaga-ga- 2788
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2736 TTACCTTACTTCAAAACTCTATTCAGAAACCAAGTGGTTGAAGAAGAAGAAGAAGAAGAA 2795
Query 2789 ----CTGATGATGATAGCTTAATGA-GTGACAAAGTCCCAAGCTTTTTCATCAATTAG 2841
||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2796 GAGACTGATGATGATAGCTTAAT-ACGTGACAAAGTCCCAAGCTTTTTCATCAATTAG 2852
> AT1G52160.1 | Symbols: TRZ3 | tRNAse Z3 | chr1:19420715-19424439
REVERSE LENGTH=2889
Length=2889
Score = 1007 bits (545), Expect = 0.0
Identities = 1112/1378 (81%), Gaps = 69/1378 (5%)
Strand=Plus/Plus
Query 801 TGATGCCTA-TGTTCTTGTGGATGACGAAGTTGTGAAAATCTCCGCCATTCTCTTAGAAC 859
|||| |||| |||||||||| |||| |||||||||||||| ||||||||| ||||| |||
Sbjct 680 TGAT-CCTATTGTTCTTGTGAATGATGAAGTTGTGAAAATATCCGCCATTATCTTAAAAC 738
Query 860 CAAGTCA--CTTA-GAAGAATCCGGCAGCAAACCTGGTGAAAC-GGCAGTTATATATGTA 915
| |||| || | ||||| || |||| |||| |||| | | | ||||| ||||||||
Sbjct 739 CGTGTCATTCTGAGGAAGACTCTGGCAACAAATCTGGCG-ATCTCTCAGTTGTATATGTA 797
Query 916 TGTGAATTACCTGAAATCA-AAGGAAAGTTTGACCCAAAGAAGGC---CATGGCTCTTGG 971
||||||||||||||||| | ||||| |||||| | ||||||| | || | ||||
Sbjct 798 TGTGAATTACCTGAAAT-ATTGGGAAAATTTGACTTAGAGAAGGCTAAGAAGGTTTTTGG 856
Query 972 ACTGAGAG-CTGGTCCAAAATACAGTTA-TCTTCAATCTGGACAGTCAGTCAAGTCAGAT 1029
| | || ||||||||||||| || || ||||| || || | ||||| ||||||||
Sbjct 857 TGTTA-AGCCTGGTCCAAAATATAG-TAGACTTCAGTCCGGTGAATCAGTGAAGTCAGA- 913
Query 1030 TTTAA-AGATATTACGGTTCATCCGAGTGATGTGATGGGACCTTCAGTTCCTGGTCCTGT 1088
| || |||||||||||||||||| |||||||| |||||||||||| | |||||||| |
Sbjct 914 TGAAAGAGATATTACGGTTCATCCAAGTGATGTTATGGGACCTTCACTCCCTGGTCCCAT 973
Query 1089 TGTTTTGCTTGTGGACTGTCCAACAGAGTCACATGCCG-AGGAACTGCTATCT-A--TAC 1144
|||| | ||||||||||||||||||||||| || || | | |||||| | ||| | ||
Sbjct 974 TGTTCTCCTTGTGGACTGTCCAACAGAGTCGCACGCTGCA-GAACTG-T-TCTCACTTA- 1029
Query 1145 CGTCTATGAAAAGTTATTATTCATGTCTTGACAATTC-AA-CAGATGGAGCTAAGCTTGT 1202
|||| || | ||||||||||||| || |||| | | || || |||||| ||| ||||
Sbjct 1030 AGTCTTTGGAGAGTTATTATTCATCTCCTGACGA-GCAAACCA-TTGGAGCAAAGTTTGT 1087
Query 1203 TAATTGTATTATTCATCTAAGTCCAGCTTCTGTAACAAATAGTTCTACATACCAAAGCTG 1262
||||||||||| ||| | || ||| ||||||| |||| |||| |||| |||||||||||
Sbjct 1088 AAATTGTATTATACATTTGAGCCCATCTTCTGTGACAAGTAGTCCTACTTACCAAAGCTG 1147
Query 1263 GATGAAG-AGATTCCGTTCTG-CCCAGCACATTCTCGCTGGACAT-GAAGCGAAGAATAT 1319
||||||| || || | || || | || |||||||| ||||| ||| ||| |||||||||
Sbjct 1148 GATGAAGAAG-TTTCATT-TGACTCAACACATTCTTGCTGGCCATCAAAG-GAAGAATAT 1204
Query 1320 GGAGTTT-CCAATCCTGAGAGCCAGTTCTAGAATCACAGCCAGACTTAACTATTTATGCC 1378
|| ||| ||||| |||| ||| ||||| |||||| | ||||||||||||||| ||||||
Sbjct 1205 GG-CTTTCCCAATTCTGAAAGCAAGTTCAAGAATCGCTGCCAGACTTAACTATCTATGCC 1263
Query 1379 CACAGTTCTTCCCTGCGCCTGGATTTTGGTCTCCTCAACATGTTAATAACTC-A--A-TA 1434
| |||||||| ||||| |||||||||||| || |||||| | ||||||| | | |
Sbjct 1264 CGCAGTTCTTTCCTGCTCCTGGATTTTGGCCTTCTCAACTTACCGATAACTCGATTATTG 1323
Query 1435 AACTCCACTTCTTTGAGCAAGTGCTTCGA-TTCGAATCTTGGTGAAAGCATTTCCGCTGA 1493
| | ||||| ||| || ||||||| || | ||| ||||||| |||||||||||| |||||
Sbjct 1324 ATC-CCACTCCTTCGAACAAGTGC-TCAAGTTCAAATCTTGCTGAAAGCATTTCTGCTGA 1381
Query 1494 AAATCTCCTCAAGTTCACTTTGCGTCCACATAG-TAATCTTGGGGTAGACAGAACTTGTA 1552
||||||||||||||||| ||||||||| | | | || || |||| | |||||| | ||||
Sbjct 1382 AAATCTCCTCAAGTTCAATTTGCGTCC-CGTGGCTATTCGTGGGATCGACAGATCGTGTA 1440
Query 1553 TCCCTAG-TCGATTGACATCCTTACG-AGTGA-TGGATGAGCTTCTTTCAGAAATTCCTG 1609
||||| | || | | ||||||| | | ||| | |||||||||| ||||| |||||||| |
Sbjct 1441 TCCCT-GCTCCACTAACATCCTCA-GAAGT-AGTGGATGAGCTACTTTCTGAAATTCCGG 1497
Query 1610 AGATCAGCAG-TAAGACCGAAGAAATCAAGCGGTTATGGAATGGACAACACAACAAGATG 1668
|||| | || ||| | ||||||||||||| ||| |||||| ||||||||||||||
Sbjct 1498 AGAT-AAAAGATAAAAGTGAAGAAATCAAGCAGTTCTGGAATAAACAACACAACAAGACA 1556
Query 1669 ATGATCGAAGAGCCATGGCTG---G-GTGAAAGCACTG---TTCCAAGCTGTCTTGAAAA 1721
|| |||||| ||| ||||||| | ||| || |||| |||||| ||||||||||||
Sbjct 1557 ATCATCGAAAAGCTATGGCTGTCTGAGTGCAA-TACTGTTCTTCCAAACTGTCTTGAAAA 1615
Query 1722 CATTAGAAGAGATGACATGGAGATAGTTCTTTTGGGCACTGGTTCCTCCCAACCCTCAAA 1781
|||||| |||||||||||||||| ||| || | ||||||||||| || || || |||||
Sbjct 1616 GATTAGACGAGATGACATGGAGATTGTTATTCTAGGCACTGGTTCGTCTCAGCCTTCAAA 1675
Query 1782 ATACCGAAATGTCACCGCAATTTACGTCGACCTATTCTCTAGAGGCAGTATTCTCTTGGA 1841
||||||||| || | ||||||| | ||| | ||||||||||| ||| ||||| | ||
Sbjct 1676 ATACCGAAACGTTAGTGCAATTTTTATTGACTTGTTCTCTAGAGGTAGTCTTCTCCTAGA 1735
Query 1842 TTGTGGGGAAGGTACCTTAGGCCAGCTTAAACGGAGATATGGTTTAGAAGGAGCTGATGA 1901
|||||| ||||| ||||| |||||||||||| | |||||||||||||| || || |||||
Sbjct 1736 TTGTGGTGAAGGAACCTTGGGCCAGCTTAAAAGAAGATATGGTTTAGACGGTGCAGATGA 1795
Query 1902 AGCAGTCAGAAACTTGAGATGTATATGGATCTCTCACATCCATGCTGATCACCATACGGG 1961
|| || ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1796 GGCGGTTAGAAAGTTGAGATGTATATGGATCTCTCACATCCACGCTGATCACCATACAGG 1855
Query 1962 TCTTGCAAGAATCCTTGCTCGTA-GACGTGAGCTTCTGAAAGGAGTGGCTCATGAGCCAG 2020
|||||| || || || |||| || || | ||||| ||||||||||| |||| |||||||
Sbjct 1856 TCTTGCGAGGATTCTAGCTCTTAGGA-GCAAGCTTTTGAAAGGAGTGACTCACGAGCCAG 1914
Query 2021 CAATTGTGGTTGGACCGAGACCGCTTAAGA-ACTTTCTCGATGCATATCAAAGACTCGAG 2079
|||||||| || ||||| |||||||| | |||||| ||||||||||||||||| |||
Sbjct 1915 TGATTGTGGTGGGGCCGAGGCCGCTTAA-ACGCTTTCTTGATGCATATCAAAGACTTGAG 1973
Query 2080 GATTTAGATATGGAGTTTCTTGATTGCAGGAA-CACCACAACAACTTCTTGGGCTTCT 2136
|||||||||||||||||||||||||| || || ||||||| |||||||||||||||||
Sbjct 1974 GATTTAGATATGGAGTTTCTTGATTGTAG-AAGCACCACAGCAACTTCTTGGGCTTCT 2030
Score = 473 bits (256), Expect = 3e-132
Identities = 399/468 (85%), Gaps = 10/468 (2%)
Strand=Plus/Plus
Query 288 TTCTTCTGATTCTTTCGAGTTTAATAAGAGAAGAGCTGAGGGATTGGATA-AGATCGATA 346
||||||| |||| |||| ||| |||||| |||||||||| ||||| || | | | |||||
Sbjct 209 TTCTTCTAATTCATTCGTGTTCAATAAGCGAAGAGCTGAAGGATTTGACATA-ACCGATA 267
Query 347 AGCCTAAGAA-GAATCTCAAG-A-G-GAATACTCGCACCCTTAATCCTACCAACACCATT 402
|| || || |||||| || | | ||| | | | |||||||| || ||||| |||
Sbjct 268 AG-AAAAAAAGGAATCT--AGAACGCAAAT-CCCAAAAGCTTAATCCCACTAACACTATT 323
Query 403 GCCTATGTTCAGATCCTTGGGACTGGAATGGATACACAGGATACATCACCTTCTGTATTA 462
|| || | ||||| ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 324 GCTTACGCACAGATACTTGGAACTGGAATGGATACACAGGATACATCATCTTCTGTATTA 383
Query 463 CTCTTCTTTGATAAACAAAGATTCATCTTTAATGCTGGAGAGGGGTTGCAACGTTTTTGT 522
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 384 CTCTTCTTTGATAAGCAAAGATTCATCTTTAATGCTGGAGAGGGCTTGCAACGTTTTTGT 443
Query 523 ACAGAACATAAAATTAAGTTATCAAAGGTAGATCATATCTTTTTGTCTCGTGTGTGCTCA 582
||||||||||| ||||| |||||||| |||||||| | |||||||||||||| ||||||
Sbjct 444 ACAGAACATAAGATTAAACTATCAAAGATAGATCATGTATTTTTGTCTCGTGTTTGCTCA 503
Query 583 GAGACAGCAGGTGGGCTTCCAGGTCTTCTACTGACTCTAGCTGGTATCGGTGAAGAAGGA 642
||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 504 GAGACAGCAGGAGGACTTCCAGGTCTTCTACTAACTCTAGCTGGTATTGGTGAAGAAGGG 563
Query 643 CTATCCGTAAACGTGTGGGGCCCTTCGGATCTTAAGTATTTAGTTGATGCTATGAGGTCA 702
|| || || || || ||||| |||||||||||||| |||||||||||||| |||| |||
Sbjct 564 CTTTCGGTGAATGTATGGGGTCCTTCGGATCTTAACTATTTAGTTGATGCAATGAAGTCG 623
Query 703 TTTATTCCTCGTGCTGCAATGGTTCATACAAGAAGTTTTGGTCCATCG 750
|||||||| || || || |||||||||||| | ||||||||||| |||
Sbjct 624 TTTATTCCACGGGCAGCTATGGTTCATACACGGAGTTTTGGTCCCTCG 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141169777602
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5