BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341806
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16680.1 | Symbols: | DNA binding;DNA-directed RNA polymera... 725 0.0
> AT3G16680.1 | Symbols: | DNA binding;DNA-directed RNA polymerases
| chr3:5683336-5684245 FORWARD LENGTH=613
Length=613
Score = 725 bits (392), Expect = 0.0
Identities = 551/625 (88%), Gaps = 21/625 (3%)
Strand=Plus/Plus
Query 12 GGACGAAGAGATCAAACAACTGTTCCTAGTCCAGCGGACATTGATGCAGATGCTGAAGGA 71
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GGACGAAGAGATCAAACGACTGTTCCTAGTCCAGAGGACATTGATGCAGATGCTGAAGGA 60
Query 72 TCGTGGCTACTCT-ATTGA-GGATTCTGAAATTACAATGACTCTAGGAGAGTTTATTGAG 129
||||||||||| | || || || |||||||||||||||||| |||| |||||||||||||
Sbjct 61 TCGTGGCTACT-TAATCGACGG-TTCTGAAATTACAATGACCCTAGAAGAGTTTATTGAG 118
Query 130 AAATATGGTGAAAATATGAAAAGGAAGGCTCTTGTTACTCTCAAAGCTAAGAAAAATGAT 189
|||||||| || |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 119 AAATATGGCGACAATATGAAAAGG-AGTCTCTTGTTACTCTCAAAGCTAAGAAAAATGAT 177
Query 190 AACAGTGATCAGCTCTATATTTTCTTCCCTGATGAGGCGAAAGTTGGAGTCGCGGATATG 249
||| |||| |||| |||||||||||||| ||| | ||||||||| | |||| |||
Sbjct 178 GACAATGATAAGCTTTATATTTTCTTCCCCAATGCTTCCAAAGTTGGAATTACGGAGATG 237
Query 250 AAGAAGTACATAAACCGGTTGAAATCTGAAAACGTTTTCAGAGCAATTTTGGTGATGCAA 309
||||| |||||| ||| ||| ||||| | ||||||||||||||||||||| ||| |||||
Sbjct 238 AAGAAATACATAGACCAGTTAAAATCGGCAAACGTTTTCAGAGCAATTTTAGTGGTGCAA 297
Query 310 GATATAAAAGAATTTTCTCGCCATGCTCAGCTTTCTATAGGTGCAGCCTATCCAAAATTT 369
|||||||| | |||||||||||| |||| | ||| | ||||||| | |||||||| ||||
Sbjct 298 GATATAAAGGCATTTTCTCGCCAGGCTCTGGTTTTTTTAGGTGCGGTCTATCCAATATTT 357
Query 370 AATATTGAAGTTTTCCAGGAGAAGGAATTGATAGTGAACGTTAACCACCATGTTTTTGTT 429
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 358 CATATTGAAGTTTTCCAGGAGAAGGAATTGATAGTGAACGTTAAGGAACATGTTTTTGTT 417
Query 430 CCTGAGCATCAAGCTCTTACCACTGAAGAGAAGCAACAA-TTTCTGGAGAGATACACAGT 488
|||||||||||||||||||| ||||||||||||||| || ||||| ||||| |
Sbjct 418 CCTGAGCATCAAGCTCTTACTACTGAAGAGAAGCAA-AAGTTTCT--AGAGA------G- 467
Query 489 GAAAGAGAACCAGCTTCCAAGGATTCACGTGACTGATCCAATTGCAAGATACTTTGGACT 548
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 468 -AAAGAGAACCAGCTTCCAAGGATTCACGTGACTGATCCAATTGCGAGATACTTTGGACT 526
Query 549 AAAACGTGGCGAAGTCGTCAAGATCACACGTCAGAGTGAAACCTCTGGTCGTTACGTTAC 608
||||||||||||||||||||||||| | || | ||||||||| ||||||||||| ||||
Sbjct 527 AAAACGTGGCGAAGTCGTCAAGATCTCTCGACTGAGTGAAACATCTGGTCGTTATATTAC 586
Query 609 TTATCGATCGCTATGTTATATAACC 633
|||||| | ||||||||||||||
Sbjct 587 TTATCG--C--TATGTTATATAACC 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30693063817
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5