BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg341806 Length=636 Score E Sequences producing significant alignments: (Bits) Value AT3G16680.1 | Symbols: | DNA binding;DNA-directed RNA polymera... 725 0.0 > AT3G16680.1 | Symbols: | DNA binding;DNA-directed RNA polymerases | chr3:5683336-5684245 FORWARD LENGTH=613 Length=613 Score = 725 bits (392), Expect = 0.0 Identities = 551/625 (88%), Gaps = 21/625 (3%) Strand=Plus/Plus Query 12 GGACGAAGAGATCAAACAACTGTTCCTAGTCCAGCGGACATTGATGCAGATGCTGAAGGA 71 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 GGACGAAGAGATCAAACGACTGTTCCTAGTCCAGAGGACATTGATGCAGATGCTGAAGGA 60 Query 72 TCGTGGCTACTCT-ATTGA-GGATTCTGAAATTACAATGACTCTAGGAGAGTTTATTGAG 129 ||||||||||| | || || || |||||||||||||||||| |||| ||||||||||||| Sbjct 61 TCGTGGCTACT-TAATCGACGG-TTCTGAAATTACAATGACCCTAGAAGAGTTTATTGAG 118 Query 130 AAATATGGTGAAAATATGAAAAGGAAGGCTCTTGTTACTCTCAAAGCTAAGAAAAATGAT 189 |||||||| || |||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 119 AAATATGGCGACAATATGAAAAGG-AGTCTCTTGTTACTCTCAAAGCTAAGAAAAATGAT 177 Query 190 AACAGTGATCAGCTCTATATTTTCTTCCCTGATGAGGCGAAAGTTGGAGTCGCGGATATG 249 ||| |||| |||| |||||||||||||| ||| | ||||||||| | |||| ||| Sbjct 178 GACAATGATAAGCTTTATATTTTCTTCCCCAATGCTTCCAAAGTTGGAATTACGGAGATG 237 Query 250 AAGAAGTACATAAACCGGTTGAAATCTGAAAACGTTTTCAGAGCAATTTTGGTGATGCAA 309 ||||| |||||| ||| ||| ||||| | ||||||||||||||||||||| ||| ||||| Sbjct 238 AAGAAATACATAGACCAGTTAAAATCGGCAAACGTTTTCAGAGCAATTTTAGTGGTGCAA 297 Query 310 GATATAAAAGAATTTTCTCGCCATGCTCAGCTTTCTATAGGTGCAGCCTATCCAAAATTT 369 |||||||| | |||||||||||| |||| | ||| | ||||||| | |||||||| |||| Sbjct 298 GATATAAAGGCATTTTCTCGCCAGGCTCTGGTTTTTTTAGGTGCGGTCTATCCAATATTT 357 Query 370 AATATTGAAGTTTTCCAGGAGAAGGAATTGATAGTGAACGTTAACCACCATGTTTTTGTT 429 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 358 CATATTGAAGTTTTCCAGGAGAAGGAATTGATAGTGAACGTTAAGGAACATGTTTTTGTT 417 Query 430 CCTGAGCATCAAGCTCTTACCACTGAAGAGAAGCAACAA-TTTCTGGAGAGATACACAGT 488 |||||||||||||||||||| ||||||||||||||| || ||||| ||||| | Sbjct 418 CCTGAGCATCAAGCTCTTACTACTGAAGAGAAGCAA-AAGTTTCT--AGAGA------G- 467 Query 489 GAAAGAGAACCAGCTTCCAAGGATTCACGTGACTGATCCAATTGCAAGATACTTTGGACT 548 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 468 -AAAGAGAACCAGCTTCCAAGGATTCACGTGACTGATCCAATTGCGAGATACTTTGGACT 526 Query 549 AAAACGTGGCGAAGTCGTCAAGATCACACGTCAGAGTGAAACCTCTGGTCGTTACGTTAC 608 ||||||||||||||||||||||||| | || | ||||||||| ||||||||||| |||| Sbjct 527 AAAACGTGGCGAAGTCGTCAAGATCTCTCGACTGAGTGAAACATCTGGTCGTTATATTAC 586 Query 609 TTATCGATCGCTATGTTATATAACC 633 |||||| | |||||||||||||| Sbjct 587 TTATCG--C--TATGTTATATAACC 607 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30693063817 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5