BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341820
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT2G11200.1 | Symbols: | F-box family protein | chr2:4451924-4... 375 3e-103
AT3G18120.1 | Symbols: | F-box associated ubiquitination effec... 198 6e-50
> AT2G11200.1 | Symbols: | F-box family protein | chr2:4451924-4452388
FORWARD LENGTH=465
Length=465
Score = 375 bits (203), Expect = 3e-103
Identities = 380/461 (82%), Gaps = 30/461 (7%)
Strand=Plus/Plus
Query 1 ATGAGAGATTCAACAACGGCGATGTCCGATCTGCCACAAGATGTGGTAGAGGAAGTGCTC 60
|||||||||| |||||| |||||||||||||| |||| |||| ||| |||||||||||||
Sbjct 1 ATGAGAGATTTAACAACAGCGATGTCCGATCTTCCACGAGATTTGGAAGAGGAAGTGCTC 60
Query 61 TCTAGTGTTCC-GTTGA-CATCTCTTAGAGCAGTGCGAACTACTTGCAAAAAGTGGAACA 118
||||| | ||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTAG-GGTCCAGTT-AGCATCTCTTAGAGCAGTGCGAACTACTTGCAAAAAGTGGAACC 118
Query 119 GT--TT-ATCCAAACATCGGAGCTTTACAAAGAAGCACATCCGTAAATCAAGATCAGAAA 175
|| || ||||||| |||| ||||||||||||| | || |||||||||||||||| ||
Sbjct 119 GTCGTTTATCCAAATATCG---CTTTACAAAGAAGTATATTCGTAAATCAAGATCAGCAA 175
Query 176 CGAAGAAGAAAGAGTTTCTGGCGATCATGATGATGGATTCTAGTGTCTACCTAATTAGTG 235
|| | | ||||||||| | |||||||||||| ||||||||||| | || ||||| | ||
Sbjct 176 CGGCGGATAAAGAGTTTTTAGCGATCATGATGTTGGATTCTAGTCTATATCTAATGAATG 235
Query 236 TTGGAATTCACAAG---GACGATGACTACAACGCT-A-T-A---A-ACCGA-AAA-GGTA 283
||| ||| ||||| ||| | || |||||| | | | | | | || ||| ||||
Sbjct 236 TTGTTATTGACAAGATCGACAACGAAAACAACGTTGAATCATCTATAGAGAGAAAAGGTA 295
Query 284 AACTGATTAGCCTAAACAATGTAGATGGTGGAGTTGATATATCTA-GCGTCTTCCACTGT 342
||||||||||| ||||| | | |||||| ||| |||||| || ||||| |||||| |
Sbjct 296 AACTGATTAGCGTAAACGACGCAGATGG---AGTCGATATAA-TAAGCGTCGTCCACTAT 351
Query 343 AGCGGTTTGTTGTTATGCAC-CACCAAAGATAAAACACCGA-GGCTTGTGGTTTGGAACC 400
| | ||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||
Sbjct 352 AATGCTTTGTTGTTATGC-CTCACCAAAGAAAAAACACCGAAGGCTTGTGGTTTGGAACC 410
Query 401 CTTATCGTGGGAAAACAAGGTGGATCGAAACTACTTATCGT 441
||| ||||||| || ||||||||||||||||| ||||||||
Sbjct 411 CTTGTCGTGGGCAATCAAGGTGGATCGAAACTGCTTATCGT 451
> AT3G18120.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:6210090-6210572 REVERSE LENGTH=483
Length=483
Score = 198 bits (107), Expect = 6e-50
Identities = 234/293 (80%), Gaps = 17/293 (6%)
Strand=Plus/Plus
Query 462 ATTTGGTCCGCGTCTTAGTCTACCGTCTCACTCTAGT-ATGGTCGATAGTGTGACTCTAT 520
|||||| || | ||| |||||||||| ||||||| | || | |||| |||||||||||
Sbjct 138 ATTTGGACCCCCTCTAAGTCTACCGTTTCACTCTTTTAAT-GAAGATACTGTGACTCTAT 196
Query 521 CTAGTGTTAGAGATGAGCAGCTTGCTGTGTTATTTCAGCGCA-AGGGTACATTACAGATG 579
||||||||||||||||||| ||| | ||||||||| || | | | | |||||||||||||
Sbjct 197 CTAGTGTTAGAGATGAGCAACTTACAGTGTTATTTGAGAG-AGATGATACATTACAGATG 255
Query 580 GAGATATGGATTACGTCTAACATTGAGCCTGAAGCGGCGTCCTGGAGCATGTTGTTCTTA 639
||||||||||||||| |||| |||||||| ||| | ||||| ||||||| ||||||||||
Sbjct 256 GAGATATGGATTACGACTAAGATTGAGCCCGAAACAGCGTCGTGGAGCAAGTTGTTCTTA 315
Query 640 GTGGTGGATAAGAAAACACTT-CT--TA--C--TT--ATGAT-CAACATGAGAGtttttt 689
| ||||| || | || |||| || | | || | | | | | || || ||| ||
Sbjct 316 GCGGTGGGTATGGAACCACTAACTGGTTTGCAGTTTCAGGTTGCCGC-TGGGAATTTCTT 374
Query 690 tGTTGACGAGGAGAAGAAAGTTGTTATGGTTTTTGC-TAAAGACAAAGAGACG 741
|||||||||||||||||||||||| || |||||| |||||||| |||||||
Sbjct 375 TGTTGACGAGGAGAAGAAAGTTGTCGTG-TTTTTGGATAAAGACACAGAGACG 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5