BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341828
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16900.1 | Symbols: | Protein of unknown function (DUF567) ... 843 0.0
> AT3G16900.1 | Symbols: | Protein of unknown function (DUF567)
| chr3:5772106-5772849 FORWARD LENGTH=558
Length=558
Score = 843 bits (456), Expect = 0.0
Identities = 529/564 (94%), Gaps = 6/564 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAAACAAGATGGGACTAGCAGCAGCAACACGATACTACCACTCGTAGGATCTGAG 60
||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCAAAACAAGATCCCACT---AGCAGCAACACGATGCTACCACTCGTAGGATCTGAG 57
Query 61 TTTGTTCGTCCTCAACCGTTAGATCTAACGATAACCGGAGATACAGTGAAGGACGCAACC 120
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TTTGTTCGTCCACAGCCGTTAGATCTAACGATAACCGGAGATACAGTGAAGGACGCAACC 117
Query 121 GGGAACAAAGTGTTCAAAGTCAAAACGCCTCTCTTTGGTCTCCACAACAAAAGAATTTTG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 118 GGGAACAAAGTGTTCAAAGTCAAAACGCCTCTCTTTGGTCTCCACAACAAAAGAATCTTG 177
Query 181 GTTGATCCTAATGACTCTCCCATTGTCACCATGAAAATGAAGGTGACTAGTAAGCATGAT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 178 GTTGATCCTAATGACTCTCCCATTGTCACCATGAAAATGAAGGTGACAAGTAAGCACGAT 237
Query 241 CGATGGCAAGTGTATAGAGGAAGTGATTTAGATAATAAGATCTTCACAGTTAAAAGATCC 300
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 238 CGATGGCAAGTGTATAGAGGAAGTGATTTAGATGATAAGATCTTCACGGTTAAAAGATCT 297
Query 301 TCGACTGTTCAATTGAAGACAAGAGTTGAAGTATTCTTGAAACATAACCAGACCAAAGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 298 TCGACTGTTCAATTGAAGACAAGAGTTGAAGTATTCTTGAAACATAACCAGACCAGAGAA 357
Query 361 TCGTCTTGTGATTTCACAATCAAAGGTCGCTTTATGAAACGTGCTTGTACTATCTATGTT 420
|||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 358 TCGTCTTGTGATTTCACAATTAAAGGTCGGTTTATGAAACGTGCATGTACTATCTATGTC 417
Query 421 GGAGATTCTACCAAAATCATCGCTCAGGTATATGAAGGAGATGAGAGACCAGTGGCTACA 480
| ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 418 GCAGACTCTACCAAAATCATCGCTCAGGTATATGAAGGACATGAGAGATTAGTGGCTACA 477
Query 481 GTTTATCCTAATGTCGATTATGCTTTCATTGTCACACTAATCTTTATATTTGACCTCATC 540
|||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 478 ATTTATCCTAATGTCGACTATGCTTTTATTGTTACACTTATCTTTATATTTGACCTCATT 537
Query 541 AATAATGGTGGGACTGCGATCTGA 564
|||| ||| || |||| |||||||
Sbjct 538 AATA-TGG-GG-ACTGGGATCTGA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5