BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg341831

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16930.1 | Symbols:  | unknown protein; Has 21 Blast hits to...   250    2e-65


> AT3G16930.1 | Symbols:  | unknown protein; Has 21 Blast hits 
to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:5778876-5779363 FORWARD LENGTH=210
Length=210

 Score =  250 bits (135),  Expect = 2e-65
 Identities = 158/169 (93%), Gaps = 2/169 (1%)
 Strand=Plus/Plus

Query  202  CCATCTGCGGGaaaaaaaGAAGAAGATGCATTATATGGATGGCAAGTCTGGCAC-CAGAA  260
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct  4    CCATCTGCGGGAAAAAAAGAAGAAGATGCATTATATGGATGGCAAGTCTGGCACAC-GAA  62

Query  261  CGGCACAAAATGTCCGGAGGGATCAATTCCAGTTCGAAGGCTAATTTCTCATGAGAACGA  320
            ||||||||||||||||||||||||||||||| |||||||||| ||||| | || ||||||
Sbjct  63   CGGCACAAAATGTCCGGAGGGATCAATTCCAATTCGAAGGCTGATTTCCCTTGGGAACGA  122

Query  321  GACTGTCATCAGTTCTAACGCCGGGGATAGAGTTACCGGTGGACATGAG  369
            |||| |||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct  123  GACTATCATCACTTCTAACGCCGGGGATAGAGTCACCGGTGGACACGAG  171


 Score = 52.8 bits (28),  Expect = 7e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  461  ACGAGTTCAGCTTGGGTCAACTCTGGCT  488
            ||||||||||||||||||||||||||||
Sbjct  181  ACGAGTTCAGCTTGGGTCAACTCTGGCT  208



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59236643100


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5