BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341841
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17050.1 | Symbols: | transposable element gene | chr3:5814... 494 8e-139
> AT3G17050.1 | Symbols: | transposable element gene | chr3:5814748-5816592
FORWARD LENGTH=1845
Length=1845
Score = 494 bits (267), Expect = 8e-139
Identities = 546/674 (81%), Gaps = 46/674 (7%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGTATCGTTTGGGTTTTTGGGTTTGATGCTTGTAGTGGTGGTGATTGGGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAAGTATCGTTTGGGTTTTTGGGTTTGATGCTTGTAGTGGTGGTGATTGGGGTT 60
Query 61 GTGGAGAGTAGGAGGTTTGAGAAGGAGACGTTAGGAggtggtggtggtgg---acttggc 117
|||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GTGGAGTGTAGGAGATTTGAGAAGGAGACGTTAGGAGGTGGTGGTGGTGGTGGACTTGGC 120
Query 118 ggtggctttggtggtgggaaaggttttggcggaggaattggtggcggtggaggtgccggt 177
||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||
Sbjct 121 GGTGGCTTTGGTGGTGGGAAAGGTTTTGGGGGAGGAATTGGTGCCGGGGGAGGTTTTGGT 180
Query 178 ggaggttttggtggtggtataggtggaggcc-atg-gt-ggtg--gttt-aggaggtggc 231
|| ||| || || ||| ||||| || | | | || | | | |||||| ||
Sbjct 181 GGTGGTGCAGGAGGAGGTGCCGGTGGTGGTTTAGGAGGAGGCGCCGGTGGAGGAGGAGGT 240
Query 232 attggtggaggc-cacggtggaggtattggtggtggtgctggaggaggaggtattggtgg 290
|||||||| || || || |||||| ||||||||| | |||||||||| ||||||
Sbjct 241 ATTGGTGGTGGTGCA-GGAGGAGGTGCCGGTGGTGGTT-T--AGGAGGAGGTGCTGGTGG 296
Query 291 tggtgct-ggaggaggtgc-tggtggaggtattggtggtggtgccggaggaggtgctggt 348
|| || ||||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct 297 AGGA-CTCGGAGGAGGT-CATGGTGGAGGTATTGGTGGTGGTGCTGGAGGAGGTGCTGGT 354
Query 349 ggtggtctaggaggaggtg-ctggtggaggtagtggtggtggtgcaggaggaggtggagg 407
|| || ||||||||||| | ||||| |||| |||||||||||| |||||||||
Sbjct 355 GGAGGACTAGGAGGAGGCCAC-GGTGGGGGTATTGGTGGTGGTGCCGGAGGAGGT----- 408
Query 408 tctaggaggaggccacggcggaggtattggtggtggtgccggaggaggtgctggtggagg 467
||| || ||||| | || ||||||||||||||||||||||| || ||||| || |||||
Sbjct 409 TCT-GGTGGAGGACTTGGAGGAGGTATTGGTGGTGGTGCCGGTGGTGGTGCCGGAGGAGG 467
Query 468 actcggaggaggtgctggtggaggCCACGGCGGaggtattggtggtggtgccggaggagg 527
| |||||| | ||| ||||| || || |||||||||||||||||||| ||||||||
Sbjct 468 --T-GGAGGAC-T--TGGAGGAGGTCATGGTGGAGGTATTGGTGGTGGTGCTGGAGGAGG 521
Query 528 ttctggcggaggtattggt-ggtggtgccggaggaggttctggtggaggtattggtggtg 586
| |||| ||||| | ||| || || || | | | | || || | |||||||||||
Sbjct 522 TGCTGGTGGAGG-ACTGGGAGGAGG--CC--ACG-G-T---GG-GG-G-TATTGGTGGTG 568
Query 587 gtgctggaggaggtgccggtggaggaattggaggtggtgctggtggGGGATTAGGCGGCG 646
|||| ||||||||| | ||||||||| ||||||| ||| |||||| || ||| || |
Sbjct 569 GTGCCGGAGGAGGTTCTGGTGGAGGACTTGGAGGAGGTATTGGTGGTGGCGCAGGAGGAG 628
Query 647 GTGCTGGCGGAGGT 660
|||| || ||||||
Sbjct 629 GTGCCGGTGGAGGT 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5