BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg341872 Length=900 Score E Sequences producing significant alignments: (Bits) Value AT3G17350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1336 0.0 > AT3G17350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50290.1); Has 203 Blast hits to 203 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5934064-5935303 FORWARD LENGTH=980 Length=980 Score = 1336 bits (723), Expect = 0.0 Identities = 837/893 (94%), Gaps = 3/893 (0%) Strand=Plus/Plus Query 11 TCTTCTTCTTCTTCTCCTTCCTCTACACAATCACAACCCTAACATTTCCGCCATTAACAA 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTTCTTCTTCTTCTCCTTCCTCTACACAATCACAACCCTAACATTTCCGCCATTAACAA 120 Query 71 CGTCAGCAGCAACATCATGCCGAACATTATGCGGCAACATCCCAATAAACTACCCATTCG 130 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 121 CCTCAGCAGCAACATCATGCCGAACATTATGCGGCAACATCCCAATAAACTACCCGTTCG 180 Query 131 GCATCGACGGCGGTTGCGGATCTCCTCAGTTCAAAGGAATGTTCAATTGCTCCACCGATC 190 |||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct 181 GCATCGACGGCGGTTGCGGATCTCCTCAATACAGAGGAATGTTCAATTGCTCCACCGATC 240 Query 191 TATTTTTCACCACTCCTTCTGGCAGTTACAAGGTCCAGAGCATCGATTACGAGAAGAAAA 250 ||| ||||||||||||||| ||||| || |||||||| |||||||||||||||||||||| Sbjct 241 TATATTTCACCACTCCTTCCGGCAGCTATAAGGTCCAAAGCATCGATTACGAGAAGAAAA 300 Query 251 CTATGGTAATCTTCGATCCGGCGATGTCTACTTGCTCGATTCTTCAGCCTCACCACGATT 310 | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 301 CAATGGTAATCTTCGATCCTGCTATGTCTACTTGCTCGATTCTTCAGCCTCACCACGATT 360 Query 311 TCAAAATGGCTGATATCCAAAACGCTCTTATTAGACCTTCGTACGACACCGTTTTCGCAC 370 |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 361 TCAAAATGGCGGATATTCAAAACACTCTTATTAGACCTTCGTACGACACCGTTTTCGCAC 420 Query 371 TTTTCAACTGTTCCAACGACTCTCCTGTTCATAATCGTTACCGGAATCTCTGTTTTAATG 430 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 421 TTTTCAACTGTTCCAACGATTCTCCTGTTCATAATCGTTACCGGAATCTATGTTTTAATG 480 Query 431 CCGCCGGCCACTCTTGCGACGAGCTTTATAGCTCTTGTACCTCCTTTCGAATCTTCAACA 490 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 481 CCGCCGGCCACTCTTGCGACGAGCTTTATAGCTCCTGTACTTCCTTTCGAATCTTCAACA 540 Query 491 CTACCTCTCCCTCTGGTAATA---GTACGATTCATACGACGCCGTATTGCTGTTTCACTA 547 | || ||||||| |||||| | ||||| |||||||||||||||||||||||||||||| Sbjct 541 CCACTTCTCCCTATGGTAACAACAGTACGGTTCATACGACGCCGTATTGCTGTTTCACTA 600 Query 548 GCTACGATACGGTGCGGGTGATGAGTATGAACATTTTGGATTGCTCGCATTACACGACGG 607 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 601 ACTACGATACGGTGCGGGTGATGAGTATGAACATTTTGGATTGCTCACATTACACGACGG 660 Query 608 TGATTGACAATGGGAAAATGAGAGGCGTGGCGCCTTTGGATTGGTCGTATGGAATTGAGC 667 ||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||| |||| Sbjct 661 TGATTGACAATGGAAAAATGAGAGGAGTGGGGCCTTTGGATTGGTCCTATGGAATCGAGC 720 Query 668 TTTCGTTCTCGGCGCCGGAGATTGGCTGTGACCGTTGCCGGAAGTCAGGTGGTACGTGTG 727 |||||| ||||| ||||||||||||||||||||||||| ||||||||||| || |||| Sbjct 721 TTTCGTACTCGGTAACGGAGATTGGCTGTGACCGTTGCCGAAAGTCAGGTGGCACTTGTG 780 Query 728 GTTTTGACGCCGAGACGGAGATCTTTCTTTGCCAATGTTCCGGTTCCAACAACAACCCTA 787 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 781 GCTTTGACGCCGAGACGGAGATCTTTCTTTGCCAGTGTTCCGGTTCCAACAACAACCCTA 840 Query 788 CGAGAGAATGTGGTGGAGGTATGACTAATCAAGGAGGCTGCAATTCTATAAACATAAATT 847 |||||||||||||||||||||||||| ||| ||||||||||| || || ||||||||||| Sbjct 841 CGAGAGAATGTGGTGGAGGTATGACTGATCGAGGAGGCTGCAGTTTTACAAACATAAATT 900 Query 848 ATACAACCATTCTCTTGGTTATGTTCATGTCTTTTCTTTACACTGTTTTGTGA 900 || ||| | ||||||| |||||||||||||||| ||||||||||||||||| Sbjct 901 TTATAACGACTCTCTTGACTATGTTCATGTCTTTTATTTACACTGTTTTGTGA 953 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43954878625 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5