BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341872
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1336 0.0
> AT3G17350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G50290.1);
Has 203 Blast hits to 203 proteins in 13 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr3:5934064-5935303 FORWARD LENGTH=980
Length=980
Score = 1336 bits (723), Expect = 0.0
Identities = 837/893 (94%), Gaps = 3/893 (0%)
Strand=Plus/Plus
Query 11 TCTTCTTCTTCTTCTCCTTCCTCTACACAATCACAACCCTAACATTTCCGCCATTAACAA 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCTTCTTCTTCTCCTTCCTCTACACAATCACAACCCTAACATTTCCGCCATTAACAA 120
Query 71 CGTCAGCAGCAACATCATGCCGAACATTATGCGGCAACATCCCAATAAACTACCCATTCG 130
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CCTCAGCAGCAACATCATGCCGAACATTATGCGGCAACATCCCAATAAACTACCCGTTCG 180
Query 131 GCATCGACGGCGGTTGCGGATCTCCTCAGTTCAAAGGAATGTTCAATTGCTCCACCGATC 190
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 181 GCATCGACGGCGGTTGCGGATCTCCTCAATACAGAGGAATGTTCAATTGCTCCACCGATC 240
Query 191 TATTTTTCACCACTCCTTCTGGCAGTTACAAGGTCCAGAGCATCGATTACGAGAAGAAAA 250
||| ||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||
Sbjct 241 TATATTTCACCACTCCTTCCGGCAGCTATAAGGTCCAAAGCATCGATTACGAGAAGAAAA 300
Query 251 CTATGGTAATCTTCGATCCGGCGATGTCTACTTGCTCGATTCTTCAGCCTCACCACGATT 310
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 301 CAATGGTAATCTTCGATCCTGCTATGTCTACTTGCTCGATTCTTCAGCCTCACCACGATT 360
Query 311 TCAAAATGGCTGATATCCAAAACGCTCTTATTAGACCTTCGTACGACACCGTTTTCGCAC 370
|||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 TCAAAATGGCGGATATTCAAAACACTCTTATTAGACCTTCGTACGACACCGTTTTCGCAC 420
Query 371 TTTTCAACTGTTCCAACGACTCTCCTGTTCATAATCGTTACCGGAATCTCTGTTTTAATG 430
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TTTTCAACTGTTCCAACGATTCTCCTGTTCATAATCGTTACCGGAATCTATGTTTTAATG 480
Query 431 CCGCCGGCCACTCTTGCGACGAGCTTTATAGCTCTTGTACCTCCTTTCGAATCTTCAACA 490
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 481 CCGCCGGCCACTCTTGCGACGAGCTTTATAGCTCCTGTACTTCCTTTCGAATCTTCAACA 540
Query 491 CTACCTCTCCCTCTGGTAATA---GTACGATTCATACGACGCCGTATTGCTGTTTCACTA 547
| || ||||||| |||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 541 CCACTTCTCCCTATGGTAACAACAGTACGGTTCATACGACGCCGTATTGCTGTTTCACTA 600
Query 548 GCTACGATACGGTGCGGGTGATGAGTATGAACATTTTGGATTGCTCGCATTACACGACGG 607
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 ACTACGATACGGTGCGGGTGATGAGTATGAACATTTTGGATTGCTCACATTACACGACGG 660
Query 608 TGATTGACAATGGGAAAATGAGAGGCGTGGCGCCTTTGGATTGGTCGTATGGAATTGAGC 667
||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||| ||||
Sbjct 661 TGATTGACAATGGAAAAATGAGAGGAGTGGGGCCTTTGGATTGGTCCTATGGAATCGAGC 720
Query 668 TTTCGTTCTCGGCGCCGGAGATTGGCTGTGACCGTTGCCGGAAGTCAGGTGGTACGTGTG 727
|||||| ||||| ||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 721 TTTCGTACTCGGTAACGGAGATTGGCTGTGACCGTTGCCGAAAGTCAGGTGGCACTTGTG 780
Query 728 GTTTTGACGCCGAGACGGAGATCTTTCTTTGCCAATGTTCCGGTTCCAACAACAACCCTA 787
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 781 GCTTTGACGCCGAGACGGAGATCTTTCTTTGCCAGTGTTCCGGTTCCAACAACAACCCTA 840
Query 788 CGAGAGAATGTGGTGGAGGTATGACTAATCAAGGAGGCTGCAATTCTATAAACATAAATT 847
|||||||||||||||||||||||||| ||| ||||||||||| || || |||||||||||
Sbjct 841 CGAGAGAATGTGGTGGAGGTATGACTGATCGAGGAGGCTGCAGTTTTACAAACATAAATT 900
Query 848 ATACAACCATTCTCTTGGTTATGTTCATGTCTTTTCTTTACACTGTTTTGTGA 900
|| ||| | ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 901 TTATAACGACTCTCTTGACTATGTTCATGTCTTTTATTTACACTGTTTTGTGA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5