BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341951
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18170.1 | Symbols: | Glycosyltransferase family 61 protein... 1805 0.0
AT3G18180.1 | Symbols: | Glycosyltransferase family 61 protein... 1177 0.0
> AT3G18170.1 | Symbols: | Glycosyltransferase family 61 protein
| chr3:6228342-6229662 FORWARD LENGTH=1321
Length=1321
Score = 1805 bits (977), Expect = 0.0
Identities = 1119/1188 (94%), Gaps = 8/1188 (1%)
Strand=Plus/Plus
Query 434 TTTCAGATGAAAATAAATTGGAGAAAACTATGAAACCTATATGCACCAAGCTAGCAAGAA 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 TTTCAGATGAAAATAAATTGGAGAAAACTATGAAACCTATATGCACCAAGCTAGCAAGAA 82
Query 494 CAGAGTTCTGTGAATTAAGCGGCGACGTAAGAATCCACGGTAAGTCCGCGACTGTTT-TA 552
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 83 CAGAGTTCTGTGAATTAAACGGCGACGTAAGAGTCCACGGTAAGTCCGCGACTGTTTCT- 141
Query 553 GCTGCGATCACGTTTGCGTTTTCAGGG-AATTCCACGTGGCATATGAGACCTTACGCGCG 611
||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 142 GCTGCGATCACGTTTGCGTTTTC-GGGAAATTCCACGTGGCATATAAGACCTTACGCGCG 200
Query 612 AAAAGGTGAC-CTGGTGGCGATGAATCGCGTGAGAAAATGGACCGTGAAATTGGAACAAA 670
|||||||||| | |||||| ||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 201 AAAAGGTGACAC-GGTGGCAATGAAGCGCGTGAGAGAATGGACGGTGAAATTGGAACAAA 259
Query 671 ACGCTGACCAATTAGAAAACGCTAATTTCTCGCGTTGCGTTAGGAATCACAGCGTTCCGG 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 ACGCTGACCAATTAGAAAACGCTAATTTCTCGCGTTGCGTTAGGAATCACAGCGTTCCGG 319
Query 731 CGATGATTTTCTCTCTCGGAGGCTACACGATGAACAATTTCCACGATTTCACCGATATCG 790
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 320 CGATGATTTTCTCTCTCGGAGGCTACTCGATGAACAATTTCCACGATTTCACCGATATAG 379
Query 791 TGATTCCTCTGTACACGACGGCGCGTCGATTCAACGGCGAAGTTCAGTTTCTCGTGACGA 850
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 380 TGATTCCTCTGTACACGACGGCGCGTCGATTCAACGGAGAAGTACAGTTTCTCGTGACGA 439
Query 851 ACAGGAATCCATGGTGGATCAACAAATTTAAGGAATTAGTGAAGAAACTATCGAATTACG 910
||| || ||||| ||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 440 ACAAGAGTCCATCGTGGATCAACAAATTTAAGGAATTAGTGAGGAAACTCTCTAATTACG 499
Query 911 AAGTGATTTACATCGACGAAGAAGACGAAACGCATTGTTTCAGCAGCGTCACCGTCGGTC 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AAGTGATTTACATCGACGAAGAAGACGAAACGCATTGTTTCAGCAGCGTCACCGTCGGTC 559
Query 971 TCATTCGCCACCGTGAGTATTTCACTGAGTTGACTATCGATCCTTCAAATTCGGAATATT 1030
||| |||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||
Sbjct 560 TCACTCGCCACCGTGAGTATTTCAAAGAGTTGACGATCGATCCTTCGAATTCGGAGTATT 619
Query 1031 CAATGTCCGATTTCCGGAGTTTTCTAAGAGACACCTACTCATTGAGAAACGCCGCGGTGA 1090
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 620 CAATGTCCGATTTCCGGAGTTTTCTAAGAGACACCTACTCGTTGAGAAACGACGCCGTGG 679
Query 1091 TTACGAGCCAGATCCGGCGGCGGAGGCCACGGATCCTGATTTTGTCGAGGAG-CAGATCG 1149
|||||| |||||||||||||||||||||||||| ||||||||| | || || |||||||
Sbjct 680 CTACGAGACAGATCCGGCGGCGGAGGCCACGGATTCTGATTTTGGCTAG-AGGCAGATCG 738
Query 1150 CGAGCGTTCGAAAACGCCGGCGAAATCGCGAGAGCGGCGAGACAGATCGGGTTCGAAGTC 1209
|||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 739 CGAGCGTTCGTAAACACCGGCGAAATCGCGAGAGCGGCGAGACAGATCGGATTCAAAGTC 798
Query 1210 GTGGTGGCGGAAGCGAACACCGGAGTCGCGAATTTCGCACAAACCGTGAATTCCTGCGAC 1269
||||||||||||||||||| |||| ||||||| ||||| ||||| |||||||||||||||
Sbjct 799 GTGGTGGCGGAAGCGAACATCGGAATCGCGAAATTCGCGCAAACGGTGAATTCCTGCGAC 858
Query 1270 GTGATACTCGGCGTTCACGGCGCGGGGCTGACGAACATGGTGTTTTTGCCAGACAACGCG 1329
||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 859 GTGATGCTCGGCGTTCACGGCGCGGGGCTGACGAACATGGTGTTCTTGCCGGAGAACGCG 918
Query 1330 GTCGTGATTCAGATTCTTCCGATCGGTGGATTCGAGTGGCTTGCGAAGACGGATTTTGAG 1389
|| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 919 GTGGTGATTCAGGTTCTTCCGATCGGTGGATTCGAGTGGCTTGCGAAAACGGATTTTGAG 978
Query 1390 AGACCTTCGGAGGGAATGAATCTGAGGTATTTGGAGTATAAGATCGCGGCGGAGGAGAGT 1449
| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct 979 AAACCTTCGGAGGGAATGAATCTGAGGTACTTGGAGTACAAGATCGCGGTGGAGGAGAGC 1038
Query 1450 ACGCTGGTGAAGAAGTACGGACGCGACCACGAGGTCGTGAGAGATCCATCGGCGGTTGCC 1509
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1039 ACGCTGGTGAAGAAGTACGGACGCGACCACGAAATCGTGAGAGATCCATCGGCGGTTGCA 1098
Query 1510 AAACACGGGTGGGATATGTTCAAGTCGGTTTATTTGGTACAACAGAACGTTAGTATTGAT 1569
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1099 AAACACGGGTGGGAAATGTTCAAATCGGTTTATTTGGTACAACAGAACGTGAGTATTGAT 1158
Query 1570 ATAAACCGGTTCAAACCGGTTCTTGTCAAAGCTCTTGAGTTACTGTAG 1617
|||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1159 ATAAACCGGTTCAAGCCGGTTCTTGTCAAAGCTCTTGAGTTATTGTAG 1206
> AT3G18180.1 | Symbols: | Glycosyltransferase family 61 protein
| chr3:6230270-6231878 FORWARD LENGTH=1413
Length=1413
Score = 1177 bits (637), Expect = 0.0
Identities = 1039/1224 (85%), Gaps = 63/1224 (5%)
Strand=Plus/Plus
Query 400 ACTACCAACACTACAATCCCCAAGGAAGAAGTTATTTCAGA-TGAAAATAAATTGGAGAA 458
|||||||||||||||||| |||| ||||||||||||||||| || |||||| |||||||
Sbjct 214 ACTACCAACACTACAATCTCCAAAGAAGAAGTTATTTCAGAGTG-CAATAAAATGGAGAA 272
Query 459 AACTA--TGAAACCTATATGCACCAAGCTAGCAAG-AACAGAGTTCTGTGAAT-TAAGCG 514
| ||| || | || || || | | |||| ||| || |||||| || | || ||||||
Sbjct 273 ACCTATCTGTCA-CTGTA-ACA-C-A-CTAGGAAGCAA-AGAGTTTTGCG-ATGTAAGCG 325
Query 515 GCGACGTAAGAATCCACGGTAAGTCCGCGACTGTT-TTAGCTGCGATCACGTTTGCGTTT 573
|||||||||||||||| ||||| ||||| |||||| || || ||| ||||||||||||||
Sbjct 326 GCGACGTAAGAATCCATGGTAAATCCGCAACTGTTCTT-GCGGCGGTCACGTTTGCGTTT 384
Query 574 TCAGGGAATTCCACGTGGCATATGAGACCTTACGCGCGAAAAGGTGACC-TGGT--GGCG 630
|| ||||||||||||||| ||||||||||||| ||| ||||| |||| | | ||
Sbjct 385 TCCGGGAATTCCACGTGGTATATGAGACCTTATGCGAGAAAA---GACCAAGTTCCTGCC 441
Query 631 ATGAATCGCGTGAGAAAATGGACCGTGAAATTGGAACAAAACGCTGACCAATTAGAAAAC 690
||||| ||||||||| ||||||| |||||||| | | | | | |||||
Sbjct 442 ATGAAACGCGTGAGAGAATGGACGGTGAAATT--------A-G-T-A-C------AAAAC 483
Query 691 GCTAATTTCTCGCGTTGCGTTAGGAATCACAGCGTTCCGGCGATGATTTTCTCTCTCGGA 750
|||| ||| || || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 484 GCTAGTTTATCACGCTGCGTTAGGAATCACAGCGTTCCGGCGATTCTTTTCTCTCTCGGA 543
Query 751 GGCTACACGATGAACAATTTCCACGATTTCACCGATATCGTGATTCCTCTGTACACGACG 810
|||| | || ||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 544 GGCTTCTCGTTGAACAATTTCCATGATTTCACGGACATCGTGATTCCTCTGTACACGACG 603
Query 811 GCGCGTCGATTCAACGGCGAAGTTCAGTTTCTCGTGACGAACAGGAATCCATGGTGGATC 870
|||||| |||||| ||| ||||||||||| ||||||||||||| ||||| | |||||||
Sbjct 604 GCGCGTAGATTCAGCGGTGAAGTTCAGTTCCTCGTGACGAACAAGAATCTTTTGTGGATC 663
Query 871 AACAAATTTAAGGAATTAGTGAAGAAACTATCGAATTACGAAGTGATTTACATCGACGAA 930
|||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct 664 AACAAATTTAAGGAATTAGTGAGGAAACTCTCTAATTACGAAGTGATTTACATCGACGAA 723
Query 931 GAAGACGAAACGCATTGTTTCAGCAGCGTCACCGTCGGTCTCATTCGCCACCGTGAGTAT 990
||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||
Sbjct 724 GAAGACGAAACGCATTGTTTCAGCAGCGTCATCGTTGGTCTCAATCGCCACCGTGATTAT 783
Query 991 TTCACTGAGTTGACTATC-GATCCTTCAAATTCGGAATATTCAATGTCCGATTTCCGGAG 1049
|| ||| | || | | |||||||| |||||||| ||||||||||||||||||||||
Sbjct 784 GACAAAGAGCTAACGA-CTGATCCTTCGAATTCGGAGTATTCAATGTCCGATTTCCGGAA 842
Query 1050 TTTTCTAAGAGACACCTACTCATTGAGAAACGCCGCGGTGATTACGAGCCAGATCCGGCG 1109
|| || |||||||| ||||||||||||||| |||| ||| || | | || |
Sbjct 843 ATTCCTCAGAGACACATACTCATTGAGAAACTCCGCCGTG---ACTA--C-GA------G 890
Query 1110 GCGGAGGCCACGGATCCTGATTTTGTCGAGGAGCAGATCGCGAGCGTTCGAAAACGCCGG 1169
||||| ||||||||| ||||||||||| |||||||||||||||||||| | ||||| ||
Sbjct 891 GCGGAAGCCACGGATTCTGATTTTGTCTAGGAGCAGATCGCGAGCGTTTGTGAACGCGGG 950
Query 1170 CGAAATCGCGAGAGCGGCGAGACAGATCGGGTTCGAAGTCGTGGTGGCGGAAGCGAACAC 1229
|||||||| |||||||||||||| ||||| || ||||||||||||||||||| ||||
Sbjct 951 TGAAATCGCTAGAGCGGCGAGACAAATCGGATTTAAAGTCGTGGTGGCGGAAGCAAACA- 1009
Query 1230 CGG-AGTCGCGAATTTCGCACA-AACCGTGAATTCCTGCGACGTGATACTCGGCGTTCAC 1287
||| | |||||| ||||||| | ||| ||||| ||||| |||||||| ||||||||||||
Sbjct 1010 CGGAAATCGCGAGTTTCGCA-ATAACTGTGAACTCCTGTGACGTGATGCTCGGCGTTCAC 1068
Query 1288 GGCGCGGGGCTGACGAACATGGTGTTTTTGCCAGACAACGCGGTCGTGATTCAGATTCTT 1347
||||||||| |||||||||||||||| || || || |||||| |||||||||||||||||
Sbjct 1069 GGCGCGGGGATGACGAACATGGTGTTCTTACCTGATAACGCGATCGTGATTCAGATTCTT 1128
Query 1348 CCGATCGGTGGATTCGAGTGGCTTGCGAAGACGGATTTTGAG-AGACCTTCGGAGGGAAT 1406
|||||||||||||||||||||||||| |||| |||||| ||| | || ||| |||| ||
Sbjct 1129 CCGATCGGTGGATTCGAGTGGCTTGCAAAGATGGATTTCGAGTAT-CCGTCGAAGGGCAT 1187
Query 1407 GAATCTGAGGTATTTGGAGTATAAGATCGCGGCGGAGGAGAGTACGCTGGTGAAGAAGTA 1466
||||||||||||||||||||| |||||| ||||||||||||| || ||||||||| ||||
Sbjct 1188 GAATCTGAGGTATTTGGAGTACAAGATCACGGCGGAGGAGAGCACACTGGTGAAGCAGTA 1247
Query 1467 CGGACGCGACCACGAGGTCGTGAGAGATCCATCGGCGGTTGCCAAACACGGGTGGG-ATA 1525
||||||||| |||||| |||| |||||||||| ||| ||||| |||| |||||||| | |
Sbjct 1248 CGGACGCGATCACGAGTTCGTTAGAGATCCATTGGCCGTTGCAAAACGCGGGTGGGGA-A 1306
Query 1526 -TGTTCAAGTCGGTTTATTTGGTACAACAGAACGTTAGTATTGATATAAACCGGTTCAAA 1584
| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1307 CT-TTCAAGTCGGTTTATTTGGTACAGCAGAACGTTAGCGTTGATATAAACCGGTTCAAG 1365
Query 1585 CCGGTTCTTGTCAAAGCTCTTGAG 1608
| ||||||||||||||||||||||
Sbjct 1366 CTGGTTCTTGTCAAAGCTCTTGAG 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5