BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341959
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18230.1 | Symbols: | Octicosapeptide/Phox/Bem1p family pro... 1951 0.0
> AT3G18230.1 | Symbols: | Octicosapeptide/Phox/Bem1p family protein
| chr3:6251483-6254221 FORWARD LENGTH=2263
Length=2263
Score = 1951 bits (1056), Expect = 0.0
Identities = 1165/1217 (96%), Gaps = 9/1217 (1%)
Strand=Plus/Plus
Query 1 ATGGAGACCCCACTCCCTTCTTTATCGCAACTAACCCCAAATCCTACTCCCGCCGCCGCC 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 13 ATGGAGACCCCACTCCCTCCTTTATCGCAACTAACCCCAAATCCTACTCCCGCCGCCGCC 72
Query 61 GTCTCTTCCGCTATTCCGGCGGCAGTCAAGAGCGTAGCCGTTCAGCAACCGATTGATGGA 120
||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||
Sbjct 73 GTCTCTTCCGCTATTCCGGCGCCAGTTAAGAGCGTAGCCGTTCAGCAACCGATCGATGGA 132
Query 121 TCTCCACGCGCCGTCGCTATTGATACCGGAGGTCA-TCCCGAGCCACTTCCGGCTGTTCC 179
|||||||||||||| |||| ||||||||||||| | ||| ||||||||| ||||||||||
Sbjct 133 TCTCCACGCGCCGTTGCTACTGATACCGGAGGT-ATTCCTGAGCCACTTGCGGCTGTTCC 191
Query 180 CGGCGCTAAGCTTCGTCTTATGTGCAGTTTTGGTGGCCACATCATGCCTCGTCCACACGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CGGCGCTAAGCTTCGTCTTATGTGCAGTTTTGGTGGCCACATCATGCCTCGTCCACACGA 251
Query 240 CAAATCGTTGACGTACTCCGGCGGCGAGACTCGTATGGTCGTTGTTGATCGACGTGCGTC 299
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 252 CAAATCGTTGACGTACTCCGGCGGCGAGACTCGTATTGTGGTTGTTGATCGACGTGCGTC 311
Query 300 ACTGTCTTCGCTCCGATCTCGTCTCTCTAGTATGCTTCTCAACGGCCGGTCCTTCACTCT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 312 ACTGTCTTCGCTCCGATCTCGTCTCTCTAGTATGCTTCTCAACGGCCGGTCCTTTACTCT 371
Query 360 CAAGTATCAGCTCCCTAGCGAAGATCTCGATTCACTCGTCACCATCACTACCGATGAAGA 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CAAGTACCAGCTCCCTAGCGAAGATCTCGATTCACTCGTCACCATCACTACCGATGAAGA 431
Query 420 TCTGGAGAATATGATTGAGGAATACGATCGCGCGACTTCTTCAGCGACGGCGACTGCTAC 479
||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 432 TCTGGAGAACATGATCGAGGAATACGATCGCGCGGCTTCGTCAGCGACGGCGACTGCTAC 491
Query 480 GCAACGGCTCCGGTTGTTTCTTTTCGCTAATAAGCTCGAGACCGCCGCTACGATGGGATC 539
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 492 GCAACGGCTCCGGTTGTTCCTTTTCGCTAACAAGCTCGAGACCGCCGCTACTATGGGATC 551
Query 540 TCTGCTTGACGGCGCGAAATCCGACACATGGTTCGTCGATGCTCTGAATCAATCTGGTTT 599
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 552 TCTGCTTGACGGCACGAAATCTGACACATGGTTCGTCGATGCTCTGAATCAATCTGGTTT 611
Query 600 GCTTCCTCGTGGTTTATCAGATTCCGCCGCCGTGAATAACT-CCTTGGTGAATCTCGACG 658
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 612 GCTTCCTCGTGGTTTATCAGATTCCGCCGCCGTGAATAA-TACCTTGGTGAATCTCGACG 670
Query 659 AAGCTAGCGGCGGAGAGACCGAGATCCAAAACCTAGAAACTAATGTTGGTGGCGAGAACA 718
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 671 AAGCTAGCGGCGGAGAGACCGAGATCCAAAACCTTGAAACTAATGTTGGTGGCGAGAACA 730
Query 719 ATAAGCGAGCGGATTTGGTTGCTAACGGTGTGATTTCGCATCAGGAGATGCATATGAGCT 778
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 ATAAGCGAGGGGATTTGGTTGCTAACGGTGTGATTTCGCATCAGGAGATGCATATGAGCT 790
Query 779 CGATGCCTGATTCGCCAATGATGGAAGCCGCCGGTTCTTCGATAGGATCTTCTTCTTCTT 838
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 791 CGATGCCTGATTCTCCAATGATGGAAGCCGCTGGTTCTTCGATAGGATCTTCTTCTTCAT 850
Query 839 CTCCTTCCACATCCAATTTGCCACCGATTCGCGTTAGAGTCAGTGAAGACCAGAGGATAG 898
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 851 CTCCTTCCACATCCAATTTGCCACCGATTCGCGTTAGAGTCAGTGAGGACCAGAGGATAG 910
Query 899 AGGAACAATTGGCACAGATGACCTTCTCAAACATGCAAACTCAGAGGCAATTTGATGATG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 AGGAACAATTGGCACAGATGACCTTCTCAAACATGCAAACTCAGAGGCAATTTGATGATG 970
Query 959 GCGTTAGTTTGATGGCAAATCGGCCAATGATGATTCCTTCTGGTGCCATGAATGATGCTG 1018
||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 971 GCGTTAGCTTGATGGCAAATCGGCCAATGATGATTCCACCTGGTGCCATGAACGATGCTG 1030
Query 1019 CTGCGATGGCGTATAACAACGCACCTAGTGATGGTACTGCTGCCGCAAGCAATGGCCAGG 1078
| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 1031 C-G--ATGGCGTATAACAACGCACCTGGTGATGGTACTGCTCCCGCAAGCAATGGCCATG 1087
Query 1079 TTTCACCGGACGATGATCGATCCGA-TTCAGGTATATCAACTGGCTACAGGAAGCCACCT 1137
| ||||| || || ||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct 1088 TCTCACCTGAAGACGATCGATCCGAATT-AGGTGTATCAACTGGCTACAGGAAGCCACCT 1146
Query 1138 TTGCCGATGCAACCAGTAGCGATCCCACCTAGAACTATTGGAGGGTATGGCTTGACATCC 1197
|||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1147 TTGCCGATGCAACCAGTAACGATCCCACCTAGAACTGTTGGAGGCTATGGCTTGACATCC 1206
Query 1198 CCTGATTCCGTTGCAAG 1214
|||||||| ||||||||
Sbjct 1207 CCTGATTCTGTTGCAAG 1223
Score = 1295 bits (701), Expect = 0.0
Identities = 761/791 (96%), Gaps = 0/791 (0%)
Strand=Plus/Plus
Query 1334 GTGATACTAGCATTTCTTCTGCTAATTCATTTTCAAAGCCGATGTACTACCAAGACCAAC 1393
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1223 GTGATACTAGCATTTCTTCTGCTACTTCATTTTCAAAGCCGATGTACTACCAAGACCAAC 1282
Query 1394 CTCCAGCTCTGCCAAGAGCTCCTCCAGTGACGCAGCCTGAAACCACATCGGTCCAAAGCT 1453
||||||||||||||||||||||||||||| | |||||||||||||| |||| ||||||||
Sbjct 1283 CTCCAGCTCTGCCAAGAGCTCCTCCAGTGGCACAGCCTGAAACCACCTCGGCCCAAAGCT 1342
Query 1454 CTCAAGTCTTACCTCAGACTGAAAACACTTCAGCCCAAACCACCTCCCACGTCCTATCTC 1513
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1343 CTCAAGTCTTACCTCAGACTGAAAACACTTCAGCCCAAACCACCTCCCATGTCTTATCTC 1402
Query 1514 AGCCAGGTACATATACAACTATGGATCAACAACAACACCAACCTCTGGCTCAACAACCTT 1573
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1403 AGCCAGGTACGTACACAACTATGGATCAACAACAACAACAACCTCTGGCTCAACAACCTT 1462
Query 1574 TCTTACACCAAGGCGTTCAGTATATCCCTCATCCATCACAATACATCCCGGTTTACTCTC 1633
||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 1463 TCTTACACCAAGGCGTTCAGTATATCCCTCACCCATCACAATACATACCAATTTACTCTC 1522
Query 1634 ATCAGCAACAAAACTACCCTGTTTACGTGATGTCTGTCCCGCAATCTCAGCAGTATATCC 1693
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1523 ATCAGCAACAAAACTACCCTGTTTACGTGATGTCCGTCCCACAATCTCAGCAGTATATCC 1582
Query 1694 CAGCAGGAACTCCCCCACTCTACCCAAACTCAAAACCTGCCACAAACTCGAGACCTGAAG 1753
|||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 1583 CAGCAGGAACTCCCCCGCTCTACCCGAACTCAAAACCCGGCACAAACTCGAGACCTGAAG 1642
Query 1754 CTGCCCAGAACGTTTACCGTGCCGCTCCCCCTCAGGTTATTCAGCTTCAGCAACAGCATC 1813
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1643 CTGCCCAGAACGTTTACCGAGCTGCTCCCCCTCAGGTTATTCAGCTTCAGCAACAGCATC 1702
Query 1814 AGTACATGGGTTACACTGGAGCTCCTCAGCATAGCACAAACGCAAACGCCAATTACGGTA 1873
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1703 AGTACATGGGTTACGCTGGAGCTCCTCAACATAGCACAAACGCAAACGCCAATTACGGTA 1762
Query 1874 CTGGAGCTCCTCAACATAGCACAAACGCAAACGCCAACTACGGTGGACCCTATGAATACA 1933
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1763 CTGGAGCTCCTCAACATAGCACAAACGCAAACGCCAACTACGGTGGACCCTTTGAATACA 1822
Query 1934 CAAACTCTCCAAACGAGACAGTGTATTACCACACACAACCTCCTGCTGCCAACACTGCCA 1993
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1823 CAAACTCTCCAAACGAGACAGTGTATTACCACACACAAGCTCCTGCTGCAAACACTGCCA 1882
Query 1994 TTCCATTAGCGTCTCCATACCAAAGCATGACACCAGCAGCAGCCGCAGCAGCTCTAGCCG 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 TTCCATTAGCGTCTCCATACCAAAGCATGACACCAGCAGCAGCCGCAGCAGCTCTAGCCG 1942
Query 2054 ATATGTCCAAGCAAATGGCTCTTGACAGCGGCAAACAGCAACAACATATGGCTGTGTCTC 2113
|||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||
Sbjct 1943 ATATGTCCAAGCAAATGGCTCTTGACGGCGGCAAACAGCAACAGCATATGGCTGCGTCTC 2002
Query 2114 AGCCGCTTTAA 2124
|||||||||||
Sbjct 2003 AGCCGCTTTAA 2013
Score = 76.8 bits (41), Expect = 8e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1874 CTGGAGCTCCTCAACATAGCACAAACGCAAACGCCAACTACGGT 1917
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1718 CTGGAGCTCCTCAACATAGCACAAACGCAAACGCCAATTACGGT 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105320743410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5