BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341963
Length=2661
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48760.1 | Symbols: delta-ADR | delta-adaptin | chr1:1803598... 1879 0.0
AT3G18280.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 254 4e-66
> AT1G48760.1 | Symbols: delta-ADR | delta-adaptin | chr1:18035986-18039405
REVERSE LENGTH=3383
Length=3383
Score = 1879 bits (1017), Expect = 0.0
Identities = 1929/2357 (82%), Gaps = 112/2357 (5%)
Strand=Plus/Plus
Query 5 CGTCTTCAAATTCGCTCATGGACAACTTGTTCCAGCGAAGCCTCGAGGATCTGATCAAAG 64
||||||| | ||| | ||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 152 CGTCTTCCACTTCTATAATGGACAACTTGTTCCAACGAAGTCTCGAGGATCTAATCAAAG 211
Query 65 G---TC-T-T-C-G--TCTCGGAGAATCCTTTTTCCTTTCTAAATCC-TTAGAAGACATC 114
| || | | | | ||||||||||||| |||| |||||| | || || ||||| |||
Sbjct 212 GCTTTCGTCTCCAGCTTCTCGGAGAATCCAATTTCATTTCTAGAGCCGTT-GAAGAAATC 270
Query 115 CGCCGCGAAATCAAATCAACGGATCTCTCCACTAAATCCATCGCGCTTCAGAAACTCTCC 174
|||||||| |||||| | || |||||||| |||||||||| ||| ||||| || |||||
Sbjct 271 CGCCGCGAGATCAAAGCCACAGATCTCTCAACTAAATCCACCGCTCTTCACAAGCTCTCT 330
Query 175 TACCTCGCCGCACTCCACGGCGTCGATATGTCTTGGGCAGCGTTTCACGCCGTCGAGGTC 234
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct 331 TACCTCGCCGCACTTCACGGCGTCGACATGTCTTGGGCCGCGTTTCACGCCGTAGAAGTC 390
Query 235 GTGTCCTCATCTCGCTTTTC-GGATAAGAGAATCGGTTACCACGCCATTACTCAGTCATT 293
||||| || || || || | | ||||| ||||||||||| || |||||||| |||||
Sbjct 391 GTGTCTTCTTCACG-ATTCCAACACAAGAGGATCGGTTACCAAGCAATTACTCAATCATT 449
Query 294 CAACGATCAGA-CTCCGGTTCTGCTTCTGATCACAAACCAGCTCCG-GAAA-GATTTGAA 350
||||||||||| || ||||| ||||||||||||| |||||| | | |||| ||||||||
Sbjct 450 CAACGATCAGACCT-CGGTTATGCTTCTGATCACTAACCAGGT--GAGAAAGGATTTGAA 506
Query 351 TAGTTCGAATGAGTATGAGGTGAGTCTAGCTCTGGAATGTTTGTCTAGGATTGGAACTGA 410
|||| | ||||| || ||||| ||||||||| ||||||||||||||||||| |||||| |
Sbjct 507 TAGTGCTAATGAATACGAGGTTAGTCTAGCTTTGGAATGTTTGTCTAGGATCGGAACTCA 566
Query 411 TGATCTAGCTAGGGATTTAACCT-CTGAGGTTTTTACGCTCTTAGGTAGTAGTAAGGCTT 469
||| |||||||| ||||| | || |||| || ||||| ||| | ||||||||||| |||
Sbjct 567 TGACCTAGCTAGAGATTTGA-CTCCTGAAGTGTTTACTCTCCTGGGTAGTAGTAAATCTT 625
Query 470 TGGTTAAGAAGAAAGCTATTGGTGTGGTTTTGAGGGTTTTCGATAAGTACCACGATGCTG 529
| || ||||||||||| ||||||||||||||||||||||| || ||||| || |||||||
Sbjct 626 TCGTGAAGAAGAAAGCAATTGGTGTGGTTTTGAGGGTTTTTGAGAAGTATCATGATGCTG 685
Query 530 TTAAGGTATGTTTTAAGCGCCTTGTCGAGAGTCTGGAGAGCTCTGATCCGCAGATTCTGT 589
||||||| |||||||| || || || |||| ||| || | ||||||||||||||||||||
Sbjct 686 TTAAGGTGTGTTTTAAACGTCTAGTTGAGAATCTTGAAACCTCTGATCCGCAGATTCTGT 745
Query 590 CAGCTGTGGTTGGAGTGTTCTGTGAACTCACCACAAAAGATCC-AAGATCTTATCTTCCT 648
| ||||| ||||||||||||||||| || | ||||| ||||| || |||| |||||||
Sbjct 746 CTGCTGTAGTTGGAGTGTTCTGTGAGCTTGCTACAAAGGATCCTCAG-TCTTGTCTTCCT 804
Query 649 TTAGCTCCTGAATTTTACAAAATTTTTGTTGATTCGAGGAACAATTGGGATCTGATCAAG 708
||||||||||| || || ||| | || |||||||| ||||| ||||||| ||||||||||
Sbjct 805 TTAGCTCCTGAGTTCTATAAAGTATTGGTTGATTCAAGGAATAATTGGGTTCTGATCAAG 864
Query 709 GTTCTTAAAATATTTGCTAAGTTGGCTTTGGTTGAGCCTAGGTTGGCTAAGAAGGTGGCT 768
|||||||| ||||||||||||||||| ||| |||| || || |||| ||||||||| |||
Sbjct 865 GTTCTTAAGATATTTGCTAAGTTGGCCTTGATTGAACCGAGATTGGGTAAGAAGGTTGCT 924
Query 769 GATCCAATCTGTGAACTTATGAGGAGGACTGTGGGAAAGTCT-TTGTTGTTTGAGTGTAT 827
|| || || ||||||| ||||||||||||||||| ||||||| | ||| ||||||||| |
Sbjct 925 GAGCCGATTTGTGAACATATGAGGAGGACTGTGGCAAAGTCTCTGGTT-TTTGAGTGTGT 983
Query 828 TAGAACCGTGGTGAGTAGCTTGAGCGATCAGGAAACAGCTTTGAAACTTGCTGTTGCAAA 887
| |||||||||||||||||||||| ||| | ||| | ||| |||||||||||||||||||
Sbjct 984 TCGAACCGTGGTGAGTAGCTTGAGTGATAACGAAGCGGCTGTGAAACTTGCTGTTGCAAA 1043
Query 888 GATTCGGGAGTTTCTTGTGGACGATGATCGTAATCTCAAGTACCTCGGTCTTCATGCCTT 947
||| ||||||||||| ||||| ||||||| ||||| ||||| ||||||||| | |||||
Sbjct 1044 GATCCGGGAGTTTCTGGTGGAAGATGATCCAAATCTTAAGTATCTCGGTCTTAACGCCTT 1103
Query 948 GTCAATTGTTGCTCCAAAGCATTTGTGGGCAGTTTTGGAGAACAAAGAAGCT-GTCGTCA 1006
||| ||||||||||| ||||||||||||||||||||||||||||||| || | |||||||
Sbjct 1104 GTCGATTGTTGCTCCTAAGCATTTGTGGGCAGTTTTGGAGAACAAAG-AGGTAGTCGTCA 1162
Query 1007 AGGCTCTAAGCGATGAGGATCCAAATGTTAAACTCGAGGCTTTGCATCTTTTAATGTCAA 1066
||||| | |||||||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 1163 AGGCTATGAGCGATGAGGATCCAAATGTTAAACTCGAGGCATTGCATCTCTTAATGGCAA 1222
Query 1067 TGGTGAATGAAGATAATGTGTCTGAGATTTCTC-GGATTCTTATGAATTATGCTA-TTAA 1124
|||||||||||||||||||||| || || || | ||||||||||||||||||| | | ||
Sbjct 1223 TGGTGAATGAAGATAATGTGTCGGAAATCTC-CAGGATTCTTATGAATTATGC-ACTCAA 1280
Query 1125 GTCTGACCCTTTGTTTTGCAACGAGATTATAGCTTCTATTC-TACT-GGCATGCTCCCGG 1182
||| ||||||||||| ||||| |||||||| |||| || || | |||||||||| ||
Sbjct 1281 GTCAGACCCTTTGTTCTGCAATGAGATTATTTTTTCT-GTCTTA-TCGGCATGCTCCAGG 1338
Query 1183 AACT-CATATGAGATCATAGTTGACTTTGATTGGTATTTGTCTCTTCTTGCTGAAATGGC 1241
|| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1339 AA-TGCATATGAGATCATAGTTGACTTTGATTGGTATTTGTCTCTTCTTGGTGAAATGGC 1397
Query 1242 TAGAATCCCACATTGTCAAAGAGGGCAAGAAATTGGGCATCAGTTGATTGATATTGGTAC 1301
||||||||||||||||||||||||| |||| |||| |||||||||||| ||||| ||||
Sbjct 1398 TAGAATCCCACATTGTCAAAGAGGGGAAGATATTGAGCATCAGTTGATCGATATCGGTAT 1457
Query 1302 GAGGGTCAAAGATGCTAGACTGGAGCTAGTTCGTGTTTCTCGAGCGCTGCTTATTGATCC 1361
|||||||| ||||||||||| ||||||| ||||||||| | || ||||| ||||||||
Sbjct 1458 GAGGGTCAGAGATGCTAGACCACAGCTAGTCCGTGTTTCTTGGGCACTGCTCATTGATCC 1517
Query 1362 TGCATTGCTTGGTAA-TCAGTTCTTGCACCCGATATTGTCTGCTGCTGCTTGGGCTTCAG 1420
||||||||| ||||| | |||||| ||||| ||| | ||||| ||||| |||| |||||
Sbjct 1518 TGCATTGCTCGGTAACTT-GTTCTTACACCCTATACTATCTGCAGCTGCGTGGGTTTCAG 1576
Query 1421 GGGAATATGTCGAGTTCTCTAAGACCCCTTATGAAATTGCAGAGGCGCTTCTGCAACCAC 1480
| ||||| || ||||||||||||| || ||||||| || |||||||||||||||||||
Sbjct 1577 GTGAATACGTTGAGTTCTCTAAGAATCCGTATGAAACTGTGGAGGCGCTTCTGCAACCAC 1636
Query 1481 GTACTTCTCTCTTAGCACCTTC-AGTTAGAGCAATCTACATACATTCTA-CTTTCAAAGT 1538
| ||| ||||||| | || || | | | ||| ||||| |||||||| | ||||||||||
Sbjct 1637 GAACTGATCTCTTACCCCCCTCCA-TAAAAGCTATCTATATACATTC-AGCTTTCAAAGT 1694
Query 1539 TCTTGTCTTCAGTCTCGCGGTGT-ACTTCTCAG-CCCAGGAGCCCACTTCCTC-TCCCTT 1595
|||||||||| |||| | ||| | ||||||| | ||||||| |||||||| || ||| ||
Sbjct 1695 TCTTGTCTTCTGTCTGG-GGTCTTACTTCTC-GTCCCAGGAACCCACTTCGTCATCC-TT 1751
Query 1596 GTTTGAGGAGTCTACTAGCTCTGGCTCTTCACCGGTGAATGGTATCACATACAAATCTAT 1655
| | |||| || | || |||||||||| |||||||| | ||||| | |||||||
Sbjct 1752 GGCTCAGGAATC-A--AGTTCTGGCTCTTTGTTGGTGAATGTTTTCACACATGAATCTAT 1808
Query 1656 ATCAAGTCTGGTGAATATAATTGAGCTTGGGCTGTG-CTCGTTATCTGGG-ACCCTAGAT 1713
|| |||||||||||| | ||||||||||| || | | | |||||||| ||| | |||
Sbjct 1809 ATTGAGTCTGGTGAATGTGATTGAGCTTGGTTTGGGGC-CTTTATCTGGATACCAT-GAT 1866
Query 1714 GTTGAAGTGCAGGAGAGAGCTAAGAACGTTTTAGGATTCATCGGTATGATAAAACACA-A 1772
|| ||||||||||||||||||||||| |||||||||| |||| || ||||||| || | |
Sbjct 1867 GTGGAAGTGCAGGAGAGAGCTAAGAATGTTTTAGGATACATCAGTGTGATAAAGCA-AGA 1925
Query 1773 AATAGCCGAGAAAGTAACCACTC-AAGAGAGTGAAACAGAGGCTTCTAGAGCTGTAGCAT 1831
|||||| ||| || ||| ||| |||| | |||||||| |||||||||| | |||||
Sbjct 1926 AATAGCTGAGCAATTAAAT-CTCCAAGACAACGAAACAGAAGCTTCTAGAGTTACAGCAT 1984
Query 1832 TCATGGAAGATGTTTTCTCAGAAGAGCTTGACCC-AGTTACTTCAACTGCACAGGAAAAA 1890
||||||||||||| |||||||||||| ||| || | || || |||||||||| |||||
Sbjct 1985 TCATGGAAGATGTGTTCTCAGAAGAGTTTGGTCCTATTT-CTGCAACTGCACAAGAAAAG 2043
Query 1891 GTTCCCT-TGCCGCATGGGTTAGAGCTGAAAGAGAGTCTTGAAGATCTGCAAGAGATTTG 1949
||| | | ||| ||||||||||||||||||||| ||| | |||||| | ||||| ||
Sbjct 2044 GTTTG-TGTACCGGATGGGTTAGAGCTGAAAGAGAATCTCGGGGATCTGGAGGAGATCTG 2102
Query 1950 CGGAGAATTTCTGAAACCAGTGGTGGACTCAAATTCAAATTCTAATTCGTTCTCTTCCTC 2009
|| ||| ||| ||||| |||| | | | | |||| ||| || | | |
Sbjct 2103 TGGGGAACATCTTAAACCCGTGG---A---A--T-CGGATTCG-----GTT-TCATACAC 2147
Query 2010 AGAAAATATCAGCTTCTCTGT-TGCTAAACTTAGAATCAGTGATCAAGAAGAAGCCTCAT 2068
||| || |||||||||||||| | | ||||| |||||||| |||||| |||||||| | |
Sbjct 2148 AGACAAGATCAGCTTCTCTGTCTCC-AAACTCAGAATCAGAGATCAACAAGAAGCCACTT 2206
Query 2069 CATCTTCTTCATCTCATCTGCCTGAATCTGCATC-CTTACTTGCTGAACACAG-AAAGCG 2126
||||||| || || | || | |||| || |||| || || ||||||||| | ||| ||
Sbjct 2207 CATCTTCATC-TC-C-TCCACATGAAGCTTCATCTCTG-CTAGCTGAACACCGTAAA-CG 2261
Query 2127 TCATGGCTTGTACTACCTCTCCT-CTCAGAAGAGCGATGACCACTATGATAGCAATGGCG 2185
||||| |||| || || | || |||| || || || || || | |||||||| |||
Sbjct 2262 CCATGGAATGTATTATCT-TACTTCTCA-AA-AG-GAGGATCA--A-GATAGCAACGGC- 2313
Query 2186 ACAACAA-CAAC-A-CG-CTAAACGAAT-ACCCACCAGCAAATGAGATATCCGC-GGACT 2239
|| ||| | | | | || | ||| | | |||||| ||||||||| | ||| |
Sbjct 2314 ACGTCAAGCGATTATCCTCTGG-CAAATGA---ATTAGCAAACGAGATATCC-CAGGATT 2368
Query 2240 CATTTAACAACAAGAAGAAGAGG-AA-CCAATCGAAACCAAGACCTGTAGTGGTGAAACT 2297
|||||||| ||||| ||| || || |||||| |||||| | |||||||||||||||||
Sbjct 2369 CATTTAACCCCAAGA-GAA-AGCCAAACCAATCTAAACCACGGCCTGTAGTGGTGAAACT 2426
Query 2298 GGACGAAGGGGATGAAT 2314
||||| || |||||||
Sbjct 2427 AGACGATGGAGATGAAT 2443
> AT3G18280.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr3:6267049-6267643
FORWARD LENGTH=595
Length=595
Score = 254 bits (137), Expect = 4e-66
Identities = 152/159 (96%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 2504 CTTTGCACAGCACAAAGCCGATGGTGGAGAAGACGACGTTATCGCCGCTGCACATGGGCT 2563
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 221 CTTTGCACAGCACAAAGCCGATGGTGGAGAAGACGACGTTATCGCCGTTGCACATGGGCT 162
Query 2564 TAGCTGCATGGGCGAGCATGTCACGGCTTCTGCCGCCGGGGCAAGAATCATTAGGAGAAC 2623
||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 161 TAGCTGCATTGGCGAGCACGTCACGGCTTCTGCCGCCGGGGCTAGAATCATTAGGAGAAC 102
Query 2624 CGTCGCTAGAGCAAAAAGGGAAACCCAT-GTGGTCTTGA 2661
|| |||||||||||||||||||||| || ||||||||||
Sbjct 101 CGCCGCTAGAGCAAAAAGGGAAACC-ATTGTGGTCTTGA 64
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132139727862
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5