BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341965
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18300.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1408 0.0
AT3G18295.1 | Symbols: | Protein of unknown function (DUF1639)... 782 0.0
> AT3G18300.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G48780.1);
Has 69 Blast hits to 69 proteins in 7 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6281923-6284372
FORWARD LENGTH=2181
Length=2181
Score = 1408 bits (762), Expect = 0.0
Identities = 850/893 (95%), Gaps = 4/893 (0%)
Strand=Plus/Plus
Query 562 TCCTGCAAAAAGAAAGTCTCTGAGCAGAGTTTCATCTTTCCGCCAAAC-AGAGCAAAAAG 620
||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||| |
Sbjct 1139 TCCTGCAAAAAAAAAGTCTCTGAGCAGAGTTTCATCTTTCTATCAAACTA-AGCAAAACG 1197
Query 621 GACCATCATGATCTGCACGGAGTCAAACCACCAGCGGATTTCGTTTGCTGGTGATCTCGG 680
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1198 GACCATCATGATCTGCACGGAGTCAAACCACCAGCGGTTTTCGTTTGCTGGTGATCTCGG 1257
Query 681 CCAGTCCGATAAAGGACCTCCTATGAAACATCAACCATCAGGCCCGGTTCGAAGAGACAC 740
|||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||||||
Sbjct 1258 CCAGTCCGATAAAGGAACTCCTATGGAACAACAACCATCAGGCCCGGTCCGAAGAGACAC 1317
Query 741 AACTCTTTTAGATTCATCAAACTCAGATTTCGAGTTCCACATCTCAAGAAACTTTGATCC 800
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1318 CACTCTTTTGGATTCATCAAACTCAGATTTCGAGTTCCACATCTCAAGCAACTTTGATCC 1377
Query 801 TGAAGATTCCTCACCAGCTGACGAGATCTTTGCAGACGGCATGATCCTCCCGGTCCTTCC 860
|| |||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 1378 TGGAGATTCCTCACCAGCTGACGAGATATTTGCGGACGGCATGATCCTCCCAGTTCTTCC 1437
Query 861 TTTCCAAGTAACAGCTGGATCCACCATGCCAAAACGTCTCTACAAATATGAGCTCCCTCC 920
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TTTCCAAGTCACAGCTACATCCACCATGCCAAAACGTCTCTACAAATATGAGCTCCCTCC 1497
Query 921 TATTGTCTCTGCTCCATCCTTATCCTCCTATCTTCCTCCTCTGCCTTTACCATTGCCTGA 980
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1498 TATTGTCTCTGCTCCAACCTTATCCTCTTATCTTCCTCCTCTGCCTTTACCATTGCCTGA 1557
Query 981 ACACTCGATAAAATACAGCGTGAAAGAAACTCGTGGAAGCGTAAATGGTCGAGGGAG-GG 1039
|||||| | |||||||||||||||||||||||| |||||| ||||||| |||||||| ||
Sbjct 1558 ACACTCAAGAAAATACAGCGTGAAAGAAACTCGAGGAAGCCTAAATGGACGAGGGAGCGG 1617
Query 1040 TTGCCAATTCGGATTCAGAGGCAGAGAAATCATCAAAGTCGTTTTGGAGCTTCAAGAGAA 1099
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 -TGCAAATTCGGATTCAGAGGCAGAGAAATCATCAAAGTCGTTTTGGAGCTTCAAGAGAA 1676
Query 1100 GTTCAAGCCTTAACTGCGATATAAAGAAGAGTCTGATCTGTTCGTTTCCTCGTTTAACGA 1159
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GCTCAAGCCTGAACTGCGATATAAAGAAGAGTCTGATCTGTTCGTTTCCTCGTTTAACGA 1736
Query 1160 GAAGCAATTCCACAGGATCAGTGATGAATTCGAAGAGGGAAATGCTTAGGGACATTAACA 1219
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1737 GAAGCAATTCCACAGGATCAGTGGCGATTTCGAAGAGGGAAATGCTTAGGGACATTAACA 1796
Query 1220 AGCATAGCTCGCAGAGACATGGAGTCCCACGTCCAGGGGTGAATCAATCATCTCATATGC 1279
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1797 AGCATAGCTCGCAGAGACATGGAGTCCCACGTCCAGGGGTGAATCCATCATCTCATATGC 1856
Query 1280 GTCCTCCTTCATCTCTCTGCTGCAGCTCGTATCAGTTCAGGCCACAAAAACACGCCGGAA 1339
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 GTCCTCCTTCCTCTTTCTGCTGCAGCTCGTATCAGTTCAGGCCACAAAAACACGCCGGAA 1916
Query 1340 AGAATGGTGGTGGAAGAGGAGGAAGTTTTTGGATTGCTCCGGTGATCGGTGGTCCATCTC 1399
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 AGAATGGTGGCGGAAGAGGAGGAAGTTTTTGGATTGCTCCGGTGATCGGTGGTCCATCTC 1976
Query 1400 CGTTTGGGTTAGGATCCATCTTACGACTTACGAAAGAGAAGAAAAAGAAGTAA 1452
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1977 CGTTTGGGTTAGGATCCATCTTACGACTTACGAAAGAGAAAAAAAAGAAGTAA 2029
> AT3G18295.1 | Symbols: | Protein of unknown function (DUF1639)
| chr3:6281204-6282306 FORWARD LENGTH=1021
Length=1021
Score = 782 bits (423), Expect = 0.0
Identities = 535/583 (92%), Gaps = 32/583 (5%)
Strand=Plus/Plus
Query 1 ATGGAGCTTCCTCCTCCACCGGAAAGATCCAAACGCCTCCATAACTTCACCTTACCTTAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 ATGGAGCTTCCTCCTCCACCGGAAAGATCCAAACGCCTCCATAACTTCACCTTACCTTAT 124
Query 61 CTCCGATGGGGTCAGCAAAGATTCCTCCGCTGCGTCAAGCTTCCTCACCACAACCGA--- 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 CTCCGATGGGGTCAGCAAAGATTCCTCCGCTGCGTCAAGCTTCCTCACCACAACCGATCT 184
Query 118 ---TC---T-C--CTTCTTCTTCTTCTCCTTCTCCCGATCATAGATCTCACAACGGTGGA 168
|| | | ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 185 CCTTCTTTTCCTTCTTCTTCTTCTTCTCCTTCTCCCGATCATAGATCTCACAACGGAGGA 244
Query 169 CTTGT-TGGAGAGCTCAGGGTCGATCTCGTCTACGATGCCAACAAACCTAAGCTCTCCGT 227
||| | || ||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 245 CTT-TCAGGTGAGCTCAGGCTCGATCTCGTCTACGATGCCAACAGACCTAAGCTCTCCGT 303
Query 228 TTTGGGAAATGGAGGTG---ACAACAACGGCGATGTTGTTGCTGCAGCTGCTCGGCCGTG 284
|||||| |||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 304 TTTGGGCAATGGAGGTGACAACAACAACGGCGATGTTG-T--TGCAGCTGCTCGGCCGTG 360
Query 285 GAATTTGAGGACCAGAAGAGCTGCTTGTAACG-A--ACCTGGTGATGAATCCACCAGGAT 341
||||||||| || ||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct 361 GAATTTGAGAACGAGAAGAGCTGCTTGTAACGAACCACCTGGTGATGATTCCACCAGGAT 420
Query 342 CATCGAGTCTTCTTCTTCTCTACGGAGACATGAAATTGGCGTTAAGAGAGGTGGTAGCGA 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATCGAGTCTTCTTCTTCTCTACGGAGACATGAAATTGGCGTTAAGAGAGGTGGTAGCGA 480
Query 402 AGATGGTGGTGATGGTGATTCGCAGCACAA---GAATGAGAAAGTGAAATTCTCTGTTTC 458
|||||| || | | |||||||||| || |||||||||||||||||||||||||||
Sbjct 481 AGATGGAGG--A-G---ATTCGCAGCAGAATAAGAATGAGAAAGTGAAATTCTCTGTTTC 534
Query 459 TTTGTTGAGAGAAGAAATCGAACAAGATTTCTCAGCCCTAATTGGTAAAAGACCTCCTAG 518
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 535 TTTGTTGAGAGAAGAAATCGAACAAGATTTCTCTGCCTTAATTGGTAAAAGACCTCCGAG 594
Query 519 AAGACCGAAGAAGAGACCGAGATTGGTTCAGAAGCAAATGAAT 561
| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 595 ACGACCGAAGAAGAGACCCAGATTGGTTCAGAAGCAAATGAAT 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71585977170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5