BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342053

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19200.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   555    2e-157


> AT3G19200.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G34419.1); 
Has 51 Blast hits to 51 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6649228-6650077 
REVERSE LENGTH=753
Length=753

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 393/434 (91%), Gaps = 22/434 (5%)
 Strand=Plus/Plus

Query  1    ATGGCTAATGCTGTAGAACAATCTTCATTGTATCCATCCTTTGTAGACGCAAGAATCTCA  60
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| 
Sbjct  72   ATGGCTAATGCTGTAGAACAATCCTCATTGTATCCATCCTTCGTAGACGCAAGAATCTCG  131

Query  61   TTCTCCAATGATTTTGCAGACAGTGACAGTAAACAGACAGTGTCAAGAGTGGA-GGATCA  119
            |||||||||||||||||||||||||| |||||||| || |  |||||||  || || |||
Sbjct  132  TTCTCCAATGATTTTGCAGACAGTGATAGTAAACATACGGCATCAAGAGCAGATGG-TCA  190

Query  120  GATGAAGTACAAGGAAGCTCCTGTATCTTCGGATTTCAAATTCAATGTCGAAAACTTGGG  179
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  191  GATGAAGTACAAGGAAGCTCCTGTTTCTTCGGATTTCAAATTCAATGTCGAAAACTTCGG  250

Query  180  TTTCACTTGTGCGGCTGATGAGATCTTCTTTGGTGGAGTTTTGTTGCCACTGGAGAAGAC  239
            |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  251  TTTCACTTCTGCGGCTGATGAGATCTTCTTTGGTGGAGTTTTGTTGCCACTTGAGAAGAC  310

Query  240  TACTCAGAGGAAAGTGACGACACTTAGAGATGAACTAAGTGCTCAAGATTCTGACCGTAC  299
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  311  TACTCAGAGGAAAGTGACGACACTTAGAGATGAATTAAGTGCTCAAGATTCTGACCGTAC  370

Query  300  CATCATC-TCAAAGGGATCTCGTAATTGGTGGAAGTTAGGTCTCAACAAGTCCAAG----  354
            |||| || ||||||||||||||||| |||||||| |||||||||||||||||||||    
Sbjct  371  CATC-TCATCAAAGGGATCTCGTAACTGGTGGAAATTAGGTCTCAACAAGTCCAAGAAAA  429

Query  355  --------AA-AA--TCCA---TGCACACAAATCTCAGAATTGTCTTGCAAGTATAATGG  400
                    || ||  ||||   | |||||||||||||||||||||||||||||||| |||
Sbjct  430  TCCATTCCAACAACTTCCATCTTCCACACAAATCTCAGAATTGTCTTGCAAGTATACTGG  489

Query  401  AATCTGATGACTGA  414
            ||||||||||||||
Sbjct  490  AATCTGATGACTGA  503



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5