BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342057

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G19920.1 | Symbols: APS2, ASA1 | Pseudouridine synthase/arch...   586    5e-167


> AT1G19920.1 | Symbols: APS2, ASA1 | Pseudouridine synthase/archaeosine 
transglycosylase-like family protein | chr1:6914613-6916805 
REVERSE LENGTH=1801
Length=1801

 Score =  586 bits (317),  Expect = 5e-167
 Identities = 363/386 (94%), Gaps = 0/386 (0%)
 Strand=Plus/Plus

Query  1    ATGACTGTTAAGAGCTCATTGATTGATCCCGACGGTGGTGAATTGGTGGAATTGATTGTA  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  320  ATGACTGTTAAGAGCTCGTTGATTGATCCCGACGGTGGTGAATTGGTGGAATTGATTGTA  379

Query  61   CCGGAATCTGAAATCGGAGCGAAGAGAGCTGAATCAGAGACGATGCCGAAAGTGAAGCTG  120
            |||||| |||| || |||| ||||| ||||||||||||||||||||| ||||||||||||
Sbjct  380  CCGGAAACTGAGATTGGAGTGAAGAAAGCTGAATCAGAGACGATGCCTAAAGTGAAGCTG  439

Query  121  ACGAAGATTGATCTTGAGTGGGTTCATGTGATTAGTGAAGGCTGGGCTAGTCCTTTAAAA  180
            |   ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  440  AATCAGATTGATCTTGAGTGGGTTCATGTGATTAGTGAAGGTTGGGCTAGTCCTTTAAAA  499

Query  181  GGGTTCATGAGAGAAGATGAGTATCTACAAAGTTTGCATTTTAATTCTCTTAGATTAAAA  240
            |||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct  500  GGGTTCATGAGAGAAGATGAGTATTTGCAAAGTTTGCATTTTAATTCTCTTAGGTTAAAA  559

Query  241  AATGGGACTTTTGTGAATATGTCTCTTCCTATTGTTCTTGCTATTGATGAAGAGACTAAG  300
            ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct  560  AATGGGACTTTTGTGAACATGTCTCTTCCTATTGTTCTTGCTATTGATGATGATACTAAG  619

Query  301  GAACAAATCGGATCATCCAAGAATGTTGCTCTTGTTAGCCCTCAAGGAGATATCATTGGT  360
            ||||| |||||||||||  ||||||||||||||||| |||||||||||||||||||||||
Sbjct  620  GAACAGATCGGATCATCTGAGAATGTTGCTCTTGTTTGCCCTCAAGGAGATATCATTGGT  679

Query  361  TCTCTTCGAAGTGTGGAGATATACAA  386
            ||||| |||||||||||||| |||||
Sbjct  680  TCTCTCCGAAGTGTGGAGATTTACAA  705



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5