BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342068
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19340.1 | Symbols: | Protein of unknown function (DUF3754)... 1744 0.0
> AT3G19340.1 | Symbols: | Protein of unknown function (DUF3754)
| chr3:6701273-6704226 REVERSE LENGTH=1733
Length=1733
Score = 1744 bits (944), Expect = 0.0
Identities = 1046/1091 (96%), Gaps = 24/1091 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAACAACACAATAAGGAAGTGATTCGTCTTGAGCCCGAATCTGTCATCCCTATC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 156 ATGGCGGAACAACACAATAAGGAAGTGATTCGTCTTGAGCCCGAATCGGTCATCCCTATC 215
Query 61 CTCAAACCTAAACTCATCATGACCTTGGCTAATCTCATTGAACATAGCAATGATAGACAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 CTCAAACCTAAACTCATCATGACCTTGGCTAATCTCATTGAACATAGCAATGATAGACAA 275
Query 121 GAGTTCCTCAAGCTCTGTAAGAGAATTGAGTACACTGTTCGAGCTTGGTATCTTCTTCAA 180
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GAGTTCCTTAAGCTATGTAAGAGAATTGAGTACACTGTTCGAGCTTGGTATCTTCTTCAA 335
Query 181 TTTGAAGATCTCATGCAACTCTACTCTCTGTTTGATCCTGTACACGGTGCTCAGAAAATC 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 336 TTTGAAGATCTCATGCAACTATACTCTCTGTTTGATCCTGTACACGGTGCTCAGAAAATC 395
Query 241 CAGCAGCAGAACTTAACTTCTCAAGAAATTGATGTCCTTGAACAAAATTTCCTAGCTTAC 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 396 CAGCAGCAGAACTTAACTTCTCAAGAGATTGATGTCCTTGAACAAAATTTCCTAGCTTAC 455
Query 301 TTGTTTCAGGTTATGGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TTGTTTCAGGTTATGGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTT 515
Query 361 GCACACTCTGGGCAGTATCTTCTAAATCTTCCCATCAAAGTTGATGAGTCTAAGTTTTCT 420
||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 516 GCACACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGAT--G----AG------ 563
Query 421 TGCTTTTGGTGGATGAAGCTTGACAAGAAGCTGCTCAAGAGGTATTTTGAGGAGCATCCA 480
| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 T-C----------T-AAGCTTGACAAGAAGCTGCTCAAGAGGTATTTTGAGGAGCATCCA 611
Query 481 CATGAAAATCTTCCAGATTTTTCTGATAAGTATGTCATCTTCAGACGTGGTATTGGATTG 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CATGAAAATATTCCAGATTTTTCTGATAAGTATGTCATCTTCAGACGTGGTATTGGATTG 671
Query 541 GATAAAACCACTGATTATTTTTTCATGGAGAAATTGGATGTGATCATTTCACGTTTTTGG 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 GATAAAACCACAGATTATTTTTTCATGGAGAAATTGGATGTGATCATTTCACGTTTTTGG 731
Query 601 TCCTTTCTCATGAGAATCACCAGGTTAGAGAAATTACGCGCTAAGAGGTCAAACAGTCTT 660
||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||
Sbjct 732 TCCTTTCTCATGAGAATCACCAGGTTAGAGAAATTACGCGCCAAAAGGTCAAGCAGTCTT 791
Query 661 AACAAGAAAGATCCCAAAAAAGATGATGAGCCAAACCCTGACACAGATAATGATGAATTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 AACAAGAAAGATCCCAAAAAAGATGATGAGCCAAACCCTGACACAGATAATGATGAATTG 851
Query 721 TATGTGGAGCGTATTCGCCTTGAGAATTCAAAATTGAGCGCTAAGAGTTTCTTGAGCAAG 780
|||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||
Sbjct 852 TATGTGGAGCGTATTCGCCTTGAGAATTCAAAGCTGAGCTTTAAGAGTTTTTTGAGCAAG 911
Query 781 CTCACAATACAAGAGCCTACATTCGATAGAATCATTGTTGTTTATAGACGAGCTAGCTCT 840
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 912 CTCACAATACAGGAGCCTACATTCGATAGAATGATTGTTGTTTATAGACGAGCTAGCTCT 971
Query 841 AAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTTCAAAAACATCCCTATGGCTGAC 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 972 AAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTTCAAAAACATTCCTATGGCTGAC 1031
Query 901 ATGGAGATTGTGCTTCCTGAGAAAAGAAACCCTGGACTGACTCCAATGGATTGGGTCAAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 ATGGAGATTGTGCTTCCTGAGAAAAGAAACCCTGGACTGACTCCAATGGATTGGGTCAAA 1091
Query 961 TTTCTGATATCTGCAGTAGTTGGTCTGGTAGCCGTGCTTACTTCGGTTGAGATGCCTAAA 1020
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1092 TTTCTAATATCTGCAGTAGTTGGTCTGGTAGCGGTGCTTACTTCGGTTGAGATGCCTAAA 1151
Query 1021 TCAGATCCATGGGTAATTATTGCCATTCTCTCCACAGTGCTTGGTTATTGTGCGAAAACA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TCAGATCCATGGGTAATTATTGCCATTCTCTCCACAGTGCTTGGTTATTGTGCGAAAACA 1211
Query 1081 TACTTCACGTT 1091
|||||||||||
Sbjct 1212 TACTTCACGTT 1222
Score = 667 bits (361), Expect = 0.0
Identities = 392/407 (96%), Gaps = 2/407 (0%)
Strand=Plus/Plus
Query 1170 CTTCA-GTTTCCAGCAGAACATGGCTACATACCAGAACTTGATAACTCAGTCAATGTATG 1228
||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1214 CTTCACG-TTCCAGCAGAACATGGCTACGTATCAGAACTTGATAACTCAGTCAATGTATG 1272
Query 1229 ATAAACAACTAGACAGCGGGAGGGGAACGCTGTTACATTTGTGTGATGACGTGATTCAGC 1288
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1273 ATAAACAACTAGACAGCGGGAGGGGAACGCTACTACATTTGTGTGATGATGTGATTCAGC 1332
Query 1289 AAGAAGTAAAAGAGGTGATGATTTGCTTCTACATACTAATGGAGCAGGGGAAAGCTACCT 1348
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAGAAGTAAAAGAGGTAATGATTTGCTTCTACATACTAATGGAGCAGGGGAAAGCTACCT 1392
Query 1349 TGGAGGATCTGGATCTGAGGTGCGAGGAACTGATAAAGGAAGAGTTTGGTGCGAGGTGTA 1408
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 TGGAGGATCTGGATTTGAGGTGCGAGGAACTGATAAAGGAAGAGTTTGGTGCGAGGTGTA 1452
Query 1409 ACTTTGATGTAGAAGATGCAGTCCAGAAGCTAGAGAAGTTGGGGATTGTTGCTCGGGACA 1468
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1453 ACTTTGATGTAGAAGATGCAGTCCAGAAGCTAGAGAAGTTGGGGATAGTTGCTCGGGACA 1512
Query 1469 CCATTGGCAGGTACTACTGCATGGGGCTGAAGCGAGCCAACGAAATTATAGGGACTACCA 1528
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1513 CTATTGGAAGGTACTACTGCATGGGGCTGAAGCGAGCCAACGAGATTATAGGGACTACCA 1572
Query 1529 CGGAGGAGCTTGTCCTGAAGGCCAAACAGGGCGTCACCCCTTCTTGA 1575
|||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1573 CGGAGGAGCTTGTCCTCAAGGCCAAACAGGGCGTCACACCTTCTTGA 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5