BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg342085 Length=813 Score E Sequences producing significant alignments: (Bits) Value AT3G19500.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1297 0.0 > AT3G19500.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:6759016-6760939 REVERSE LENGTH=1132 Length=1132 Score = 1297 bits (702), Expect = 0.0 Identities = 777/814 (95%), Gaps = 2/814 (0%) Strand=Plus/Plus Query 1 ATGGGAGATACCGCAGAGGATCAGAACGACCGAGCTATGATGGAAGCTGAAGGAGTCACG 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 47 ATGGGAGATACCGCAGAGGATCAGGACGACCGAGCTATGATGGAAGCTGAAGGAGTAACG 106 Query 61 AGCTTCTCCGAACTTCTTATGTTCTCTGACGGCGTTCTCAGCTCCTCCTCCGACCACCAA 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 107 AGCTTCTCCGAACTTCTTATGTTCTCTGACGGCGTTCTCAGCTCCTCTTCCGACCACCAA 166 Query 121 CGTGAGGGTAATGTCGGCGATCGTGGAGAAGACAGCTTGGGTTTTGTATTCTCCGGCAAA 180 | ||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| Sbjct 167 CCTGAGGGTAATGTCGGCGATGGTGGAGAAGACAGTTTAGGTTTTGTATTCTCCGGCAAA 226 Query 181 ACTGGCTCAAGAATGCTCTGTTTTAGCGGAGGATATCAAAACGACGACGAGTCACTCTTC 240 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 227 ACTGGCTCAAGAATGCTCTGTTTTAGTGGAGGCTATCAAAACGACGACGAGTCACTCTTC 286 Query 241 CTAGAACCTTCTGTTCCCTCCTTGGGAGTCTCTGTTCTTGACCCTTCATGCATTAAGATC 300 ||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| Sbjct 287 CTAGAACCTTCTGTTCCAACCTCCGGAGTCTCTGATCTTGACCCTTCATGCATTAAGATT 346 Query 301 GATTCCAAGAACTCAAACGACGCGTGTACGGTCGATAAATC-ACCTAAATCATCAAACAA 359 |||| || ||||||||||||||||||||||||||||||||| | |||||||||||| ||| Sbjct 347 GATTGCAGGAACTCAAACGACGCGTGTACGGTCGATAAATCTA-CTAAATCATCAACCAA 405 Query 360 GAAGAGAACCGGAACGGGTAATGGGCAAGAGCCAGATCAAAATCGAAAACCGGACAAGAA 419 ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| Sbjct 406 GAAGAGAACCGGAACGGGTAATGGGCAAGAGTCGGATCAAAATCGAAAACCGGGCAAGAA 465 Query 420 ATGCAAGCGAAATCAGGATAAATCATCAGTTGGAATTGCAAAGGTCAGGAAAGAAAGGTT 479 | | || |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 466 AGGGAAACGAAATCAAGAGAAATCATCAGTTGGAATTGCAAAGGTCAGGAAAGAAAGGTT 525 Query 480 AGGGGAAAGAATTGCAGCGTTGCAGCAGTTGGTTTCTCCATACGGCAAGACAGATGCAGC 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 AGGGGAAAGAATTGCAGCGTTGCAGCAGTTGGTTTCTCCATACGGCAAGACAGATGCAGC 585 Query 540 TTCTGTGTTGCATGAAGCGATGGGTTACATCAAATTCTTACAGGATCAGATTCAAGTCCT 599 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 586 TTCTGTGTTGCATGAAGCGATGGGTTACATCAAATTCTTACAAGATCAGATTCAAGTCCT 645 Query 600 TTGCTCTCCTTATCTAATCAACCATTCTCTTGACGGTGGAGTTGTCACCGGAGATGTAAT 659 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 646 TTGCTCTCCTTATCTAATCAACCATTCTCTCGACGGTGGAGTTGTCACCGGAGATGTAAT 705 Query 660 GGCGGCGATGAAAGCGAAAGACTTGAGAAGCAGAGGATTATGTCTAGTACCTGTCTCATC 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 GGCGGCGATGAAAGCGAAAGACTTGAGAAGCAGAGGATTATGTCTAGTACCTGTCTCATC 765 Query 720 CACCGTACACGTGGAAAACTCCAACGGTGCTGATTTCTGGTCACCTGTTACTATGGGTCA 779 |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 766 CACCGTACACGTGGAAAATTCCAACGGTGCTGATTTCTGGTCACCTGCTACTATGGGTCA 825 Query 780 CACTACGTCACAGTCACTGCCTCACGGATTTTAA 813 ||||||||||| ||| | ||||| ||||||||| Sbjct 826 CACTACGTCACCGTCGTTACCTCAAGGATTTTAA 859 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39584507836 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5