BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342085
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19500.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1297 0.0
> AT3G19500.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:6759016-6760939 REVERSE LENGTH=1132
Length=1132
Score = 1297 bits (702), Expect = 0.0
Identities = 777/814 (95%), Gaps = 2/814 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGATACCGCAGAGGATCAGAACGACCGAGCTATGATGGAAGCTGAAGGAGTCACG 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 47 ATGGGAGATACCGCAGAGGATCAGGACGACCGAGCTATGATGGAAGCTGAAGGAGTAACG 106
Query 61 AGCTTCTCCGAACTTCTTATGTTCTCTGACGGCGTTCTCAGCTCCTCCTCCGACCACCAA 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 107 AGCTTCTCCGAACTTCTTATGTTCTCTGACGGCGTTCTCAGCTCCTCTTCCGACCACCAA 166
Query 121 CGTGAGGGTAATGTCGGCGATCGTGGAGAAGACAGCTTGGGTTTTGTATTCTCCGGCAAA 180
| ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 167 CCTGAGGGTAATGTCGGCGATGGTGGAGAAGACAGTTTAGGTTTTGTATTCTCCGGCAAA 226
Query 181 ACTGGCTCAAGAATGCTCTGTTTTAGCGGAGGATATCAAAACGACGACGAGTCACTCTTC 240
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 227 ACTGGCTCAAGAATGCTCTGTTTTAGTGGAGGCTATCAAAACGACGACGAGTCACTCTTC 286
Query 241 CTAGAACCTTCTGTTCCCTCCTTGGGAGTCTCTGTTCTTGACCCTTCATGCATTAAGATC 300
||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct 287 CTAGAACCTTCTGTTCCAACCTCCGGAGTCTCTGATCTTGACCCTTCATGCATTAAGATT 346
Query 301 GATTCCAAGAACTCAAACGACGCGTGTACGGTCGATAAATC-ACCTAAATCATCAAACAA 359
|||| || ||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 347 GATTGCAGGAACTCAAACGACGCGTGTACGGTCGATAAATCTA-CTAAATCATCAACCAA 405
Query 360 GAAGAGAACCGGAACGGGTAATGGGCAAGAGCCAGATCAAAATCGAAAACCGGACAAGAA 419
||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||
Sbjct 406 GAAGAGAACCGGAACGGGTAATGGGCAAGAGTCGGATCAAAATCGAAAACCGGGCAAGAA 465
Query 420 ATGCAAGCGAAATCAGGATAAATCATCAGTTGGAATTGCAAAGGTCAGGAAAGAAAGGTT 479
| | || |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AGGGAAACGAAATCAAGAGAAATCATCAGTTGGAATTGCAAAGGTCAGGAAAGAAAGGTT 525
Query 480 AGGGGAAAGAATTGCAGCGTTGCAGCAGTTGGTTTCTCCATACGGCAAGACAGATGCAGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AGGGGAAAGAATTGCAGCGTTGCAGCAGTTGGTTTCTCCATACGGCAAGACAGATGCAGC 585
Query 540 TTCTGTGTTGCATGAAGCGATGGGTTACATCAAATTCTTACAGGATCAGATTCAAGTCCT 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 586 TTCTGTGTTGCATGAAGCGATGGGTTACATCAAATTCTTACAAGATCAGATTCAAGTCCT 645
Query 600 TTGCTCTCCTTATCTAATCAACCATTCTCTTGACGGTGGAGTTGTCACCGGAGATGTAAT 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 646 TTGCTCTCCTTATCTAATCAACCATTCTCTCGACGGTGGAGTTGTCACCGGAGATGTAAT 705
Query 660 GGCGGCGATGAAAGCGAAAGACTTGAGAAGCAGAGGATTATGTCTAGTACCTGTCTCATC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GGCGGCGATGAAAGCGAAAGACTTGAGAAGCAGAGGATTATGTCTAGTACCTGTCTCATC 765
Query 720 CACCGTACACGTGGAAAACTCCAACGGTGCTGATTTCTGGTCACCTGTTACTATGGGTCA 779
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 766 CACCGTACACGTGGAAAATTCCAACGGTGCTGATTTCTGGTCACCTGCTACTATGGGTCA 825
Query 780 CACTACGTCACAGTCACTGCCTCACGGATTTTAA 813
||||||||||| ||| | ||||| |||||||||
Sbjct 826 CACTACGTCACCGTCGTTACCTCAAGGATTTTAA 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5