BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342087
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19520.1 | Symbols: | Protein of unknown function (DUF626) ... 765 0.0
AT1G23960.1 | Symbols: | Protein of unknown function (DUF626) ... 248 7e-65
> AT3G19520.1 | Symbols: | Protein of unknown function (DUF626)
| chr3:6772687-6774445 FORWARD LENGTH=1261
Length=1261
Score = 765 bits (414), Expect = 0.0
Identities = 756/914 (83%), Gaps = 51/914 (6%)
Strand=Plus/Plus
Query 1 ATGACGTCTCGT-TTGG-AAGATGATCGGAAGGAGTTTGTCAG-TGGGCAAATGGATTAC 57
|||||||||| | | || || ||||||||||||| ||||| || |||||| ||| | |||
Sbjct 87 ATGACGTCTC-TGTCGGTAA-ATGATCGGAAGGATTTTGT-AGATGGGCAGATGAAGTAC 143
Query 58 T-GCGTCAAGTGGCCAAATCCGATGGTTTTGATATCGACGATG-TCCAAGCACC-AGAAA 114
| ||||||| | ||| ||||||||||||| |||||||| |||| ||| || ||| || |
Sbjct 144 TGGCGTCAAATAGCCGAATCCGATGGTTTCGATATCGATGATGTTCC-AGTACCAAG-AG 201
Query 115 GAACC--A-CTGGACTGTTGTCCT-TCAACTGTCTACGCCCACGTTTTAGGCTTAGGTG- 169
||||| | ||||||||| || || || ||||| || ||||||||||||||||||| |
Sbjct 202 GAACCAGAGCTGGACTGTGGT-CTGTCGACTGTAAACACCCACGTTTTAGGCTTAGG-GC 259
Query 170 TCGGTTGCTCAAG--CTGTGCTATGGTGGGGCTTCATCGTTACAATATGCTCAATGGGAC 227
| | || | |||| | ||||||||| || ||||| ||||||||| |||||| |||||
Sbjct 260 TTGTTTACCCAAGATTTATGCTATGGTTGGTCTTCACCGTTACAATTTGCTCAGGGGGAC 319
Query 228 AAATTTCCAG-TTCTCTGCCTTACTGAAATACAACAG-GTCAATGAATTGTGTCTGCTCT 285
||| ||| || || || ||||| ||||||||| | ||||||||| ||||| ||||||
Sbjct 320 AAACTTCGAGCACCT-TGAGTTACTAAAATACAAC-GAGTCAATGAACTGTGTGTGCTCT 377
Query 286 TACTACATGACTTTGGATGCACTAGATCCTTGTAGCCAATTGCAGAAAACCTTTCAGGTT 345
||||| || |||| || |||| |||||| || |||||| ||||||||||| |||||| ||
Sbjct 378 TACTATATAACTTCGGTTGCAGTAGATCTTTCTAGCCAGTTGCAGAAAACTTTTCAGATT 437
Query 346 CGAATTGATGAAAAAAGTTTTGGAGATTTGGATTTGACGGTCTCTATTGCTAGAATTAAA 405
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 438 CGAGTTGATGAAAAAAGTTTTGGAGATTTGGATTTGACGGTCTCTGTTGCTAGACCTAAT 497
Query 406 GATGAAGAGAGAGTGACCACAAAGAAGCGTTTCATACATCACTTTCATGGTGAAGCAGAC 465
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 498 GATGAAGAGAAAGTGACCACCGAGAAGCGTTTCATACATCACTTTCATTGTGAAGCAG-C 556
Query 466 -GCTGATGATTTCTACAAAGGTCCATTGCCTGATTGGCCGTCAGTTGATGATTTGAATGA 524
|| |||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |
Sbjct 557 TGCGGATGATTTCTACAAAGGTGCATTGCCTGATTGGCCGTCAGTTGGTGATCTGAATAA 616
Query 525 TCGAAAACGATTTTACCTGGTAAATGAA-T-CAGAGTTGCTAGCCAATGATTGGATTCAC 582
|| ||||||||||||| |||| || ||| | | ||||||| | ||||||||||||| |
Sbjct 617 TCAAAAACGATTTTACATGGTGAA-GAAATGC-GAGTTGCAATCCAATGATTGGATCCGT 674
Query 583 CTGTATTTGGAACTTGCACTTTATGTAAAGG-ATCGGTGGATTTTTCG-GACT--TCTAA 638
|| ||||||||||||||| || |||| | ||| | || || | || | |||
Sbjct 675 CTATATTTGGAACTTGCAGTTGGTGTAC-GTTATCAGCAGACTTCA-GAGAGTGATCT-- 730
Query 639 GCCCAAGTTGCAGATTCTGAAAGTGGCGATAGAAACTAAGGAAGATG-TG-G-AGCCACC 695
| ||||||||||| ||||||||||||| ||||||||||||||||| | || | |||||||
Sbjct 731 GTCCAAGTTGCAGGTTCTGAAAGTGGCAATAGAAACTAAGGAAGAAGATGTGCAGCCACC 790
Query 696 GAATGGGAGACTCCATGTT-AAGAGTGC-A-ATTTTCTACATAAC-TTACAAGGGCATGG 751
|||| |||||||| | || || ||| | | || | ||||||||| || |||||| |||
Sbjct 791 GAATAGGAGACTCAA-GTCCAAAAGT-CTACATGT-CTACATAACGTTT-AAGGGCTTGG 846
Query 752 CCAAGCCCCCGATTGGTGATGAGATTGGTGAGGATGTTGAACGCAAAGCTATAGTTCGAA 811
||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 847 CCAAGGCTCCTATTGGTGATGAGATTGGTGAGCATGTTGAACGCAAAGCTATAGTTCGAA 906
Query 812 GAGTCATCGATGAAAAGA-CAGGATACTTGACTCTCCTCGGTGGGTTTTCGATTGCGAAA 870
||||||| ||||| | ||||| ||||||| || |||||||||||||| | |||||||
Sbjct 907 GAGTCATTGATGAGC-GTTCAGGACACTTGACGCTTCTCGGTGGGTTTTCCAATGCGAAA 965
Query 871 AATGATTTGAATCA 884
||||||||||||||
Sbjct 966 AATGATTTGAATCA 979
> AT1G23960.1 | Symbols: | Protein of unknown function (DUF626)
| chr1:8478407-8480316 REVERSE LENGTH=1256
Length=1256
Score = 248 bits (134), Expect = 7e-65
Identities = 349/446 (78%), Gaps = 42/446 (9%)
Strand=Plus/Plus
Query 186 TGCTATGGTGGGGCTTCATCGTTACAATATGCTCAATGGGAC-AAATTTCCAGTTC--TC 242
||||| | | ||||||||||||||||||||| | || ||||| ||| ||| ||||| ||
Sbjct 310 TGCTAAGCTTGGGCTTCATCGTTACAATATGTTGAAGGGGACTAAA-TTCGAGTTCGGTC 368
Query 243 TGCCTTACTGAAATACAACA-GGT-CAATGAATTGTGTCTG-CTCTTACTACATGACTTT 299
||| || |||||| ||||| | | ||| || ||||| | ||||| |||||| |||||
Sbjct 369 -GCC-TAATGAAATTCAACATGTTACAA--AACTGTGT-GGCCTCTTTCTACATAACTTT 423
Query 300 GGATGCACTA-GA-T-CCTTG-T--AGCCA-ATTGCA---GAAAACCTTTCAGGTTCGAA 349
||| ||| || || | | || | | || || || ||||||||||||||||||
Sbjct 424 GGAAGCA-TACGATTACGGTGTTCCTGGCACATCACATCCTCAAACCTTTCAGGTTCGAA 482
Query 350 TTGATGAAAAAAGT-TTTGG-AGATTTGGATTTGACGGTCTCTATTGCTAGAATTAAAGA 407
|||||||||||| | ||||| || ||||||||||||||||||||||||||||| || |
Sbjct 483 TTGATGAAAAAA-TATTTGGCAG-TTTGGATTTGACGGTCTCTATTGCTAGAAG-AACTA 539
Query 408 TGAAGA-GAGAGTGACCACAAAGAAGCGTTTCATACATCACTTTCATGGTGAAGCAGACG 466
| || || ||||||||| ||||||| ||||||||||||| |||||||| |||| |
Sbjct 540 C-A-GATGA-AGTGACCACCAAGAAGCCCTTCATACATCACTATCATGGTGGGGCAGTGG 596
Query 467 CTGATGAT-T--TCTACAAAGGTCCATTGCCTGATTGGCCGTCAGTTGATGATTTGAATG 523
| ||| || | ||| ||||||| ||||||||||||||| |||| ||||| |||||| |
Sbjct 597 CGGATAATATCATCTTCAAAGGTGAATTGCCTGATTGGCCCTCAGATGATGTTTTGAAAG 656
Query 524 ATC-GAAAACGATTTTACCTGGT-A--AATGAATCAGAGTTGCTAGCCAATGATTGGATT 579
| | || |||| |||||| || | | ||||||||||||| || ||| | || |||||||
Sbjct 657 A-CAGAGAACGTTTTTACGTGATTATGAATGAATCAGAGTGGCGAGCTACTGCTTGGATT 715
Query 580 -CACCTGTATTTGGAACTTGCACTTT 604
| | ||||||||||||||| |||||
Sbjct 716 TCTC-TGTATTTGGAACTTGTACTTT 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5