BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342120
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20020.1 | Symbols: ATPRMT6, PRMT6 | protein arginine methyl... 322 1e-87
> AT3G20020.1 | Symbols: ATPRMT6, PRMT6 | protein arginine methyltransferase
6 | chr3:6983705-6988099 REVERSE LENGTH=1812
Length=1812
Score = 322 bits (174), Expect = 1e-87
Identities = 190/198 (96%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 109 GGTTTTGCATTTCGGTTCGACGTTGAATTCAGCGGACCAGCCTCTTCGCCTGCCAACACT 168
|||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| | |
Sbjct 1103 GGTTTTGCATTTTGGTTCGACGTTGAATTCAGCGGACCGGCCTCTTCACCTGCCAAGAAT 1162
Query 169 ACTAGTGAAACTAGTGTTGCTAGTGGTTCTTCGTCGATAAGTCCTTCTGGAGAAGTAAAT 228
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 ACTAGTGAAACCAGTATTGCTAGTGGTTCTTCGTCGATAAGTCCTTCTGGAGAAGTAAAT 1222
Query 229 CAGAAGAAGCGGACTAATCCGAGTGATGCACTTGTGTTGTCCACCTCTCCCGAGGCTCCT 288
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1223 CAGAAGAAGCGGACTAATCCGAGTGATGCACTTGTGTTGTCCACCTCTCCCGAGTCTCCT 1282
Query 289 CCAACGCATTGGCAGCAA 306
||||||||||||||||||
Sbjct 1283 CCAACGCATTGGCAGCAA 1300
Score = 80.5 bits (43), Expect = 9e-15
Identities = 54/59 (92%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 4 GAAACTTTTTGGGGAAGCCATAATGCAGCATCAGAGCTTAATCCAAGGCAAGGTTGTGG 62
||||| || | |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 464 GAAAC-TTATAGGGAAGCCATAATGCAGCATCAGAGCTTAATCGAAGGCAAGGTCGTGG 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5