BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342141
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50130.1 | Symbols: | pseudogene, putative leucyl tRNA synt... 505 5e-142
AT1G09620.1 | Symbols: | ATP binding;leucine-tRNA ligases;amin... 346 3e-94
AT5G49950.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 191 2e-47
> AT1G50130.1 | Symbols: | pseudogene, putative leucyl tRNA synthetase,
similar to leucyl tRNA synthetase GB:BAA95667 GI:7804450
from (Homo sapiens); blastp match of 51% identity and
2.5e-213 P-value to GP|26340206|dbj|BAC33766.1||AK049472 unnamed
protein product {Mus musculus} | chr1:18566604-18569401
FORWARD LENGTH=2798
Length=2798
Score = 505 bits (273), Expect = 5e-142
Identities = 367/409 (90%), Gaps = 19/409 (5%)
Strand=Plus/Plus
Query 332 TGCTGATAAAATTGACTGAAAAACCGTACAAAGATTGTTTGTTTAGGGAGGCACTTAAGA 391
|||| || | ||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1977 TGCT-ATCAGATTGACTGAAAAAGCGTACAAAGAATGTTTGTTTAGGGAGGCACTTAAGA 2035
Query 392 ATGGGTTTTACGACTTACAAGCTGCACGAGATGAGTATGGACTCTCTTGTGGCAGTGGCG 451
||||| ||||||||||||||||||| |||||||||||| || |||||||||||||| ||
Sbjct 2036 ATGGGGTTTACGACTTACAAGCTGCTCGAGATGAGTATAGAAACTCTTGTGGCAGTGACG 2095
Query 452 ---GTATGAACCATGATTTGATACTGCACTTCATGGATGTGCAAACACACCTCATTGAAC 508
|||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2096 AAAATATGAACCATGACTTGATACTGAACTTCATGGATGTGCAAACACGCCTCATTGAAC 2155
Query 509 CAATCCGTCCCCAGTTTGCAGAATATGTATGGAGGAAACTTTTTAAGAAGGAAGGTTGTG 568
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 2156 CAATCTGTCCCCAGTTTGCAGAATATGTATGGAGGAAACTTTTGAAGAAGGAAGGTTCTG 2215
Query 569 TGGTAACAGCAGGCTGGCCTACATCAGATGAGCCAGATTTGGTTCTCAAGAGTGCTAACA 628
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2216 TGGTAACAGCAGGCTGGCCTACATCAAATGAGCCAGATTTGGTTCTCAAGAGTGCTAACA 2275
Query 629 AATATTTGCAAGATTCTATAGTCTTAATGAGAAAGCTTCTACAAAAACAGCTCTTAGGTT 688
||||||||||||||||||| ||||||||||||||||| || | |||||
Sbjct 2276 AATATTTGCAAGATTCTATTGTCTTAATGAGAAAGCT-CT-----------T---AGGTT 2320
Query 689 CCAAGAAGGCTGCTAAGAAAGCTGCTCAAGTTACAGCAGTGCCAGAGGG 737
||||||||||||||||||||| ||||||||| ||||||| ||||| |||
Sbjct 2321 CCAAGAAGGCTGCTAAGAAAGGTGCTCAAGTAACAGCAGCGCCAGCGGG 2369
Score = 370 bits (200), Expect = 2e-101
Identities = 259/287 (90%), Gaps = 5/287 (2%)
Strand=Plus/Plus
Query 1 ATGAGGAAGTATTCAAACTCTGAATCTCGTGAGAATCTTCCTAAGCCAGAAGAAAAGTTC 60
||||||| || ||| | ||||||||||||| ||||||| ||||||| ||||||||||
Sbjct 80 ATGAGGATGTTTTC-AGGGCTGAATCTCGTGATCATCTTCCAAAGCCAGGAGAAAAGTTC 138
Query 61 TTCTCCACTTTTTC-TTTCCCTTGTATGAATGGTTATCTACACACTGGCCATGCCTTCTC 119
||||||||||| | |||||| | |||||||||||||||||||| ||| ||||| |||||
Sbjct 139 TTCTCCACTTTCCCTTTTCCC-TATATGAATGGTTATCTACACATTGGGCATGCTTTCTC 197
Query 120 ACTCTCTAAGGTTGATTTTGCTTCTGCTTACCATAGACTAAGAGATGCCAATGTGCTTCT 179
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 198 ACTCTCCAAGGTTGATTTTGCTTCTGCTTACCATAGACTAAGAGGTGCCAATGTGCTTCT 257
Query 180 TCCTTTTGGTTTCCACTGTACTGGTATGCCAATTAAGGCTTCTGCGGATAAGCTTTCTCG 239
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 258 TCCTTTTGGTTTCCACTGTACTGGTATGCCTATTAAGGCTTCCGCGGATAAGCTTTCTCG 317
Query 240 TGAGATTCAACAGTTTGGTA-ACCCTCCTGTGTTCACTGCTCAAGAT 285
|||||| | ||||||||| | |||||||||| ||| |||||||||||
Sbjct 318 TGAGATCCTACAGTTTGG-AGACCCTCCTGTCTTCCCTGCTCAAGAT 363
> AT1G09620.1 | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases | chr1:3112778-3116699 REVERSE LENGTH=3720
Length=3720
Score = 346 bits (187), Expect = 3e-94
Identities = 286/332 (86%), Gaps = 13/332 (4%)
Strand=Plus/Plus
Query 3 GAGGAAGTATTCA-AACTCTGAATCTCGTGAGAATCTTCCTAAGCCAGAAGAAAAGTTCT 61
||||| ||||||| | | | |||||| ||||||||||||| || |||| ||||||||| |
Sbjct 227 GAGGATGTATTCAGAGC-C-GAATCTTGTGAGAATCTTCCAAAACCAGGAGAAAAGTTTT 284
Query 62 TCTCCACTTTTTCTTTCCCTTGTATGAATGGTTATCTACACACTGGCCATGCCTTCTCAC 121
|||| || || ||||||| | |||||||||||||||||||| ||| |||||||| |||
Sbjct 285 TCTCAACCTTCCCTTTCCCGTATATGAATGGTTATCTACACATTGGGCATGCCTTTTCAT 344
Query 122 TCTCTAAGGTTGATTTTGCTTCTGCTTACCATAGACTAAGA-GATGCCAATGTGCTTCTT 180
| || ||||||||||||||||||||||||||||| |||||| || || ||||||||||||
Sbjct 345 TGTCCAAGGTTGATTTTGCTTCTGCTTACCATAGGCTAAGAGGA-GCTAATGTGCTTCTT 403
Query 181 CCTTTTGGTTTCCACTGTACTGGTATGCCAATTAAGGCTTCTGCGGATAAGCTTTC-TCG 239
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 404 CCATTTGGTTTCCATTGTACTGGTATGCCAATTAAGGCTTCTGCGGATAAGCTT-CGTCG 462
Query 240 TGAGATTCAACAGTTTGGTAACCCTCCTGTGTTCACTGCTCAAGATGATACCATCAAGCA 299
||||||| ||||||||||||||||||||||||| |||||| |||| | ||| ||| |
Sbjct 463 TGAGATTGAACAGTTTGGTAACCCTCCTGTGTTTACTGCTGAAGAC-A--CCACCAA--A 517
Query 300 AGCTCCTGAAACTCAGGAGGAGAGTTGTGATA 331
| ||||||| |||||||||||| ||||||
Sbjct 518 -GTTCCTGAAGTTCAGGAGGAGAGCAGTGATA 548
Score = 289 bits (156), Expect = 6e-77
Identities = 243/283 (86%), Gaps = 13/283 (5%)
Strand=Plus/Plus
Query 744 GATGGATGGAGAGCTCACTGCCT-CAAGATTCTGCCAAAGCAAATTTGTCCAACAAACCT 802
||||||||||||||||||||||| | ||||||| ||||| | ||||| ||| |||||||
Sbjct 2993 GATGGATGGAGAGCTCACTGCCTGC-GGATTCTG-CAAAGTAGATTTGACCAGCAAACCT 3050
Query 803 GTCGTTTTGCCCCTGATGCAGAGATACTTGCAGAACGAAG-GGAGATATTGCAGAAGGAG 861
|| |||| |||| ||| ||||||| |||||||||| ||| | | | |||| | |||||
Sbjct 3051 GTAGTTTCCCCCCGGATACAGAGATGCTTGCAGAACTAAGTGCA-ACATTGTTGCAGGAG 3109
Query 862 GGACAATCAGAAAACTTTAAA-CAAATTCAGAAGCTTTGCATGCCTTTCCTTAAATTTAA 920
|| | | ||||||| ||| | ||||| ||| |||||||||||||||||||||| ||
Sbjct 3110 GG---A--A-AAAACTTGAAAGC-CATTCAAAAGGTTTGCATGCCTTTCCTTAAATTCAA 3162
Query 921 GAAGGACGAGGCAATATCTATTGGCCCTCAGGCTCTAAAGTTGAGGTTGCCTTTTGGAGA 980
||||||||||||||||||||||||| |||||||||| || |||||||| |||||||||||
Sbjct 3163 GAAGGACGAGGCAATATCTATTGGCACTCAGGCTCTGAACTTGAGGTTACCTTTTGGAGA 3222
Query 981 GATCGAAGTCCTTCAGAGTAACATGGACTTGATCAGGCGGCAA 1023
||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3223 GATCGAAGTCCTTCAGAGTAACAAGGACTTGATCAGGCGGCAA 3265
> AT5G49950.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:20319733-20323616 REVERSE LENGTH=1816
Length=1816
Score = 191 bits (103), Expect = 2e-47
Identities = 123/133 (92%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 1118 AGACAACTGATACATACTATAGACGTTCAAGCAGTGCGCAATATGTGGGAAATGTCTCTG 1177
||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||
Sbjct 1038 AGACAACTGATACATACTATAGACGTTCAAGCAGTTCACAATATGTGGAAAATGTCGCTG 1097
Query 1178 TTCCACTCCTTTGTACCAGTGCTTTGGACGATCCAGTTTGTAATAGGGAAGCTATTCCTT 1237
|||| |||||||| | |||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 1098 TTCCGCTCCTTTGCATCAGTGCTTTGGATGATCCAGTTTGTACTAGAGAAGCTATTCCTT 1157
Query 1238 GGGATGAATGTAG 1250
|||||||||||||
Sbjct 1158 GGGATGAATGTAG 1170
Score = 86.1 bits (46), Expect = 8e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1071 GCACCATTCTATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAG 1119
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 934 GCACCATTCCATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAG 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5