BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342163
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20210.1 | Symbols: DELTA-VPE, DELTAVPE | delta vacuolar pro... 2089 0.0
AT4G32940.1 | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar pro... 178 1e-43
> AT3G20210.1 | Symbols: DELTA-VPE, DELTAVPE | delta vacuolar processing
enzyme | chr3:7052420-7054743 FORWARD LENGTH=1681
Length=1681
Score = 2089 bits (1131), Expect = 0.0
Identities = 1308/1395 (94%), Gaps = 5/1395 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAG---TCTTGGTCACTTTCAGATCCTTGTTTTTCTTCATGCTTTGCTTATATTC 57
|||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 63 ATGTCTAGTCCTCTTGGTCACTTTCAGATTCTTGTTTTTCTTCATGCTTTGCTTATCTTC 122
Query 58 TCAGCTGAATCTCGCAAAACCCATTTGGTGAACGATAATGATGTTGAATCTAGCGACAAG 117
|||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 123 TCAGCTGAGTCCCGCAAAACCCAATTGCTGAACGATAATGATGTTGAATCTAGCGACAAG 182
Query 118 AGTGCAAAAGGCACGCGATGGGCTGTTTTAGTTGCTGGATCAAATGATTATTCTAACTAC 177
|||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 183 AGTGCAAAAGGCACACGATGGGCTGTTTTAGTTGCTGGATCAAATGAATATTATAACTAC 242
Query 178 AGGCATCAGGCTGATATATGCCATGCGTATCAGATACTCCGAAAAGGCGGTCTAAAAGAT 237
|||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 243 AGGCATCAGGCTGACATATGCCACGCGTATCAGATACTCCGAAAAGGCGGTTTAAAAGAT 302
Query 238 GAAAACATCATTGTCTTTATGTATGATGATATCGCGTTTTCCTCGGAGAATCCTAGGCCT 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GAAAACATCATTGTGTTTATGTATGATGATATCGCGTTTTCCTCGGAGAATCCTAGGCCT 362
Query 298 GGAGTTATCATCAATAAACCAGATGGAGAAGATGTTTATAAAGGAGTTCCTAAGGACTAC 357
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GGAGTTATCATTAATAAACCAGATGGAGAAGATGTTTATAAAGGAGTTCCTAAGGACTAC 422
Query 358 ACTGAAGAAACTGTTAATGTTGAAAACTTCTATAATGTGCTACTTGGAAATGAAAGTGGT 417
||| ||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 423 ACTAAAGAAGCTGTTAATGTTCAAAACTTCTACAATGTGTTACTTGGAAATGAAAGTGGC 482
Query 418 GTCACAGGAGGAAGTGGCAAAGTTGTGAAAAGTGGTCCTAATGATAACATCTTCATCTAC 477
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 483 GTCACAGGAGGAAATGGCAAAGTTGTGAAAAGTGGTCCTAATGATAATATCTTCATCTAT 542
Query 478 TATGCTGATCATGGAGCTCCTGGCTTACTAGCGATGCCCACTGGTGATGAGGTCCTTGCA 537
|||||||| |||||||||||||||||| |||||||||||||||||||||| || | |||
Sbjct 543 TATGCTGACCATGGAGCTCCTGGCTTAATAGCGATGCCCACTGGTGATGAAGTTATGGCA 602
Query 538 AAAGATTTTAATAAAGTCTTGGAGAAGATGCATAAGCGAAAAAGCTACAACAAGATGGTG 597
|||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 603 AAAGATTTCAATGAAGTCTTGGAGAAGATGCATAAGAGAAAAAAATACAACAAGATGGTG 662
Query 598 ATCTATGTTGAAGCATGTGAATCTGGAAGTATGTTTGAAGGGATTTTAAAGAAAAATCTC 657
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 663 ATCTATGTTGAAGCATGTGAATCAGGAAGTATGTTTGAAGGGATTTTAAAGAAAAATCTC 722
Query 658 AATATATACGCAGTGACTGCTGCTAATTCGAAAGAGAACAGCTTTGGAACTTACTGCCCT 717
|| |||||||||||||||||||||||||| ||||||| ||||| ||| |||||| |||
Sbjct 723 AACATATACGCAGTGACTGCTGCTAATTCTAAAGAGAGCAGCTGGGGAGTTTACTGTCCT 782
Query 718 GAGTCGTATACTCCTTCTGCTCCTGAGTTTGAAACTTGTCTCGGCGATGTATTTAGCATC 777
||||| ||| ||||| || || ||||| ||| |||||||||||||||| ||||||||||
Sbjct 783 GAGTCATATCCTCCTCCTCCTTCTGAGATTGGAACTTGTCTCGGCGATACATTTAGCATC 842
Query 778 TCTTGGCTTGAGGACAGTGACCTTCATGACATGAGCAAGGAGACTTTGAAGCAGCAATAT 837
|||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct 843 TCTTGGCTTGAGGACAGTGACCTTCATGACATGAGCAAAGAGACTTTGGAGCAACAATAC 902
Query 838 CACGTTGTAAAGAGAAGAGTAGGATCTGATGTAGAACAGACTTCTCATGTATGCCGTTTC 897
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 903 CACGTTGTAAAGAGAAGAGTAGGATCTGATGTACCAGAGACTTCTCATGTATGCCGTTTC 962
Query 898 GGGACCA-AGGAGATGCTTAATGATTATCTTGCCTCTTACATTGGAAGAAATCCTGAAAA 956
||| || || |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 963 -GGAACAGAGAAGATGCTTAAAGATTATCTTTCCTCTTACATTGGAAGAAATCCTGAAAA 1021
Query 957 CGAAAACTTCACTTTCACTGAATCCATTTCCTCACCAATCTCTAATTCTGGCTTGGTCAA 1016
||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1022 CGATAACTTCACTTTCACGGAATCCTTTTCCTCACCAATCTCTAATTCTGGCTTGGTCAA 1081
Query 1017 TCCGCGCGATATCCCTCTGTTATATCTCCAGAGAAAGATTCAAAAAGCTCCAGTGGGATC 1076
|||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||
Sbjct 1082 TCCGCGCGATATTCCTCTGCTATACCTCCAGAGAAAGATTCAAAAAGCTCCAATGGGATC 1141
Query 1077 ACCTGAAAGCAAAGAAGCTCAGAAGAAATTGTTTGACGAAATGAATCATAGGAAACAAAT 1136
|| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1142 ACTTGAAAGCAAAGAAGCTCAGAAGAAATTGCTTGACGAAAAGAATCATAGGAAACAAAT 1201
Query 1137 CGATCAGAGCATTACAGAGATTCTGCGACTTTCGGTTAAACAAACCAATGTCTTAAATCT 1196
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1202 CGATCAGAGCATTACAGACATTCTGCGGCTTTCAGTTAAACAAACCAATGTCTTAAATCT 1261
Query 1197 CCTAACTTCCACAAGAACAACAGGACAGCCTCTAGTAGACGATTGGGATTGTTTCAAGAC 1256
| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1262 CTTAACTTCCACAAGAACAACAGGACAGCCTCTTGTAGACGATTGGGATTGCTTCAAGAC 1321
Query 1257 TCTGGTTAATAGCTTCAAGAATCACTGCGGTGCAACAGTGAATTACGGATTGAAGTATAC 1316
||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1322 TCTAGTTAATAGCTTCAAGAATCACTGCGGTGCAACGGTGCATTACGGATTGAAGTATAC 1381
Query 1317 AGGAGCGCTTGCCAATATCTGCAATATGGGAGTGGATGTGAAGCAAACTGTTTCAGCCAT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 AGGAGCGCTTGCCAATATCTGCAATATGGGAGTGGATGTGAAGCAAACTGTTTCAGCCAT 1441
Query 1377 TGAACAAGCTTGTTC 1391
|||||||||||||||
Sbjct 1442 TGAACAAGCTTGTTC 1456
> AT4G32940.1 | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing
enzyme | chr4:15900270-15903268 REVERSE LENGTH=1879
Length=1879
Score = 178 bits (96), Expect = 1e-43
Identities = 385/521 (74%), Gaps = 34/521 (7%)
Strand=Plus/Plus
Query 136 TGGGCTGTTTTAGTTGCTGGATC-AAATGATTATTCTAACTACAGGCATCAGGCTGATAT 194
||||||||| |||| || ||||| | || |||| || ||||||||||||||||||||
Sbjct 285 TGGGCTGTTCTAGTCGCCGGATCTAGCGGA-TATTGGAATTACAGGCATCAGGCTGATAT 343
Query 195 ATGCCATGCGTATCAGA-TACTCCGAAAAGGCGG-TCTAAAAGATGAAAACATCATTGTC 252
||||||||| ||||| | | || | ||||| || | | ||||| || || || | ||
Sbjct 344 ATGCCATGCCTATCA-ACTTCTGAGGAAAGGTGGAT-TGAAAGAGGAGAATATTGTGGTA 401
Query 253 TTTATGTATGATGATATCGCGTTTTCC-T--CGGAGAATCCTAGGCCTGGAGTTATCATC 309
|| |||||||||||||| || | | | || ||||||| ||||||||| || |||
Sbjct 402 TTCATGTATGATGATATTGC-TAA-CAATTACG-AGAATCCAAGGCCTGGAACCATTATC 458
Query 310 AATAAACCAGATGGAGAAGATGTTTATAAAGGAGTTCCTAAGGACTACACTGAAGAA-AC 368
|| | || ||||| ||||||| ||| |||||||||| ||||| || |||| ||| |
Sbjct 459 AACAGCCCTCATGGAAAAGATGTCTATCAAGGAGTTCCCAAGGATTATACTGGAGATGA- 517
Query 369 TGTTAATGTTGAAAACTTCTATAA--TGTGCTACTTGGAAATGAAAGTGGTGTCACAGGA 426
||| |||||||| || | |||| |||| | |||||| | ||| || ||| | |||
Sbjct 518 TGTCAATGTTGATAA-T-CTATTTGCTGTGATCCTTGGAGACAAAACTGCTGTTAAAGGG 575
Query 427 GGAAGTGGCAAAGTTGTGAAAAGTGGTCCTAATGATAACATCTTCATCTACTAT-GCTGA 485
|||||||| || |||||| | ||||||||||||||| | |||||||| | ||| | |||
Sbjct 576 GGAAGTGGGAAGGTTGTGGATAGTGGTCCTAATGATCATATCTTCATATTCTACAG-TGA 634
Query 486 TCATGGAGCTCCTGGC-TTACTAGCGATGCCCACTGGTGATGAGGTCCT-TGCAAAAGAT 543
||||| | |||||| || || | |||||| ||| | | | | | |||||| |||
Sbjct 635 CCATGGTGGTCCTGGAGTT-CTTGGGATGCCAACTTCTCCTTACCTA-TATGCAAATGAT 692
Query 544 TTTAATAAAGTCTTGGAGAAGA----TGCATAAGCGAAAAAGCTACAACAAGAT-GGTGA 598
| ||| | |||||| |||||| ||| | || ||| | || || ||| | ||||
Sbjct 693 CTCAATGATGTCTTGAAGAAGAAACATGCTTTAG-GAACA---TATAA-AAGCTTGGTGT 747
Query 599 TCTATGTTGAAGCATGTGAATCTGGAAGTATGTTTGAAGGG 639
| ||| | ||||| || |||||||||||||| |||||||||
Sbjct 748 TTTATCTCGAAGCTTGCGAATCTGGAAGTATCTTTGAAGGG 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5