BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342182
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23420.1 | Symbols: | F-box and associated interaction doma... 411 9e-114
AT3G20400.1 | Symbols: EMB2743 | F-box associated ubiquitinatio... 219 6e-56
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 202 6e-51
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 178 1e-43
AT3G19470.1 | Symbols: | F-box and associated interaction doma... 132 8e-30
AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 130 3e-29
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 121 2e-26
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 75.0 1e-12
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 75.0 1e-12
> AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8386273-8387324 REVERSE LENGTH=858
Length=858
Score = 411 bits (222), Expect = 9e-114
Identities = 393/471 (83%), Gaps = 29/471 (6%)
Strand=Plus/Plus
Query 24 TAGGAGCTTTGCAAAGAAGCACCTTG---CTCAAGCAAGAGTAGCTGCAGCAAAGGAAAA 80
|||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||
Sbjct 90 TAGGAGCTTTGCAAAGAAGCACCTTGTTTGTCAAGCAAAAGTAGCT---GCAAA-GAAAA 145
Query 81 G-GAGTTTATGGTGGTCATGATGATGGATTTTAGGGTTTATCTGATGCACGTGAATCTTC 139
| |||| || ||||||||||||||||||||||||||||||| |||||| | | |||||||
Sbjct 146 GAGAGTATAAGGTGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCATAAATCTTC 205
Query 140 ACTACGACAAGGTTGAATTATGCATGAAA-CGTCAAGGT-ACACTTATTTTCCCCGACGC 197
| | |||| |||||||| || || ||| ||| || || | |||| |||||||||||||
Sbjct 206 A-GA--ACAACGTTGAATTGTGTAT-AAAGCGTGAACGTGA-ACTTCTTTTCCCCGACGC 260
Query 198 CTCAGATCAAATCTATGTACGTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCCT 257
||||||||||| || || ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 261 TTCAGATCAAATTTACGTCCGTCACGTCTTTCACTGCGACGGTTTATTGTTATGCATCAT 320
Query 258 GAAAGACAACCCTAGGCTCGTTGTTTTTAACCCGTATTGTGGGCAA-CCACGGTGGATCG 316
|||||||||||||||||| || |||| |||||||||| |||| ||| || ||||||||||
Sbjct 321 GAAAGACAACCCTAGGCTTGTGGTTTGTAACCCGTATAGTGGACAAACC-CGGTGGATCG 379
Query 317 AAGCC-ACATATAATAATCAGAGATTGGAATTT-TATTCGTTTTCTCTGGGATACAATAG 374
| | | ||| ||||| ||||||||| || | ||||||| | |||| |||||||||||
Sbjct 380 A-GACTACAAATAATCCTCAGAGATTAGA-TGCATATTCGTATGCTCTCGGATACAATAG 437
Query 375 CAACACCAAATCCCACAAAATCTTGAGATTTATTTTAT-ATCATGGTCTT-T-TCTCTTT 431
|| ||||||||||||||||||||||| ||| | ||| || | | || | |||| |
Sbjct 438 CAGTACCAAATCCCACAAAATCTTGAG-TTT-TGGTATGATGTTTGA-TTATGTCTCCTC 494
Query 432 GGCTT-TGGCTGAGTTCAAAATCTACGACTTTAACTCTGATTCATGGAGGG 481
||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 495 CACTTCTG-CTGAGTTCAAAATCTACGACTTTAACTCTGACTCATGGAGGG 544
Score = 294 bits (159), Expect = 9e-79
Identities = 248/290 (86%), Gaps = 10/290 (3%)
Strand=Plus/Plus
Query 574 ACATTTGGGCCGC-GTTTGCC-T--CTGCCCTTTGAGTGGTGTCCTGTAGATATTCTGAG 629
||||||||||||| ||||||| | | |||||||||||||| || | ||| |||| |
Sbjct 548 ACATTTGGGCCGCGGTTTGCCTTCGCCGCCCTTTGAGTGGTATCTTCAAGA-GTTCTCTG 606
Query 630 -T-CTATCTATTGTTAGAGATGAACAGCTTGCTGTGTTATTTCAACGAGA-GGATACATT 686
| |||||| |||||||||||| |||||||| ||||||||||| || | |||||||||
Sbjct 607 TTATTATCTAATGTTAGAGATGAGCAGCTTGCGGTGTTATTTCAGCG-TATGGATACATT 665
Query 687 TCAAATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAA 746
|| ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 666 ACAGATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGGTGTCATGGAGCAGCAA 725
Query 747 GTTCTTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTTAG 806
|||||||||||||||||||||||||| ||||||||| | | |||||||||||||||
Sbjct 726 GTTCTTCTTATCAGTGGATATGAGAGAACTCACCGGCCGTTACTCTATGTTTTCGTTTAG 785
Query 807 TGGTGCAAGTTTCTTCATTGATGAGGAGAAGAAAATCGCTGTGTTTTACA 856
|| ||||||||||||||||||||||||||||||| | || ||| || |||
Sbjct 786 TGATGCAAGTTTCTTCATTGATGAGGAGAAGAAAGTTGCAGTGCTT-ACA 834
> AT3G20400.1 | Symbols: EMB2743 | F-box associated ubiquitination
effector family protein | chr3:7114403-7114714 FORWARD LENGTH=312
Length=312
Score = 219 bits (118), Expect = 6e-56
Identities = 150/165 (91%), Gaps = 3/165 (2%)
Strand=Plus/Plus
Query 691 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 750
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTC 60
Query 751 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTTAGTGG- 809
||||||||||||||||||| | ||||| ||||| | |||||||||||||||| |||
Sbjct 61 TTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTA-TGGC 119
Query 810 TGCAAGTTTCTTCATTGATGAGGAGAAGAAAATCGCTGTG-TTTT 853
| ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 120 TACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTT 164
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 202 bits (109), Expect = 6e-51
Identities = 420/558 (75%), Gaps = 69/558 (12%)
Strand=Plus/Plus
Query 27 GAGCTTTGCAAAGAAGCACCTT-G--CTCAAGCAAGAGTAGCTGCAGCAAAGGAAAAGGA 83
||||||||||||||| |||||| | |||||||| |||| ||||| |||||||| ||
Sbjct 123 GAGCTTTGCAAAGAATCACCTTGGTTATCAAGCAATAGTA---GCAGCGAAGGAAAAAGA 179
Query 84 GTTTATGGTGGTCATGATGATGGATTTTAGGGTTTATCTGATGC-ACGTGAATC-TTCAC 141
||||||| ||||| ||||||||||||||||||||||| |||| | | || || | |||||
Sbjct 180 GTTTATGATGGTCCTGATGATGGATTTTAGGGTTTATTTGATTCGA-GTCAA-CGTTCAC 237
Query 142 TACGACAAGGTTGAATTATGCATGAAACGTCAAGGTACA-CTTATTTTCCCCGACGCCTC 200
| ||| | |||| | || || || | | ||||| | |||| || | | | |
Sbjct 238 AATGAC-A--TTGAGTCGTGTATTAAGCCTGAAGGT-GAGCTTA-TTAGCTTG--G--GC 288
Query 201 AGATCAAATCTATGTA-CGTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATC-CTG 258
||| || || ||||| | |||||||||||||||||||||||||||| |||||||| | |
Sbjct 289 -GATGAAGTCGATGTATC-TCAAGTCTTTCACTGCGACGGTTTATTGCTATGCATCACGG 346
Query 259 AA-AGA-C-AAC----C-CTA-GGCTCGTTGTTTTTAACCCGTATTGTGGGCAACCACGG 309
|| | | | || | ||| || ||||| ||| ||||||||||| |||||| |||||
Sbjct 347 AAGATAACGAAGATAACGCTAAGG-TCGTTCTTTGGAACCCGTATTGGGGGCAAACACGG 405
Query 310 TGGATCGAAGCC-ACATATAATAATC-AGAGATTGGA-ATTTTATTCGTTTTCTCTGGGA 366
|||||||| | | ||| ||||| || | | |||||| || | || ||| | |||| |||
Sbjct 406 TGGATCGA-GTCTACAAATAATT-TCCACAAATTGGACATGT-ATACGTATGCTCTCGGA 462
Query 367 TACAATA-GCAACACCAAATC---CC--A-C-A-AAA-TCTTGAGATTTATTTTATATCA 416
||||| | | | || |||||| || | | | ||| |||||||||||||| || |
Sbjct 463 TACAAGAAG-AGCAGCAAATCAAGCCGCAGCTACAAAATCTTGAGATTTATTG-ATTT-- 518
Query 417 TGGTCTTTTCTCTTTGGCTTTGGCTGAGTTCAAAATCTACGACTTT-AACTCTGATTCAT 475
| ||| | ||| | || ||||||||||||||||| | | | |||||||||||||
Sbjct 519 T--TCTCC-CACTT-G--TT---CTGAGTTCAAAATCTACAA-TATCAACTCTGATTCAT 568
Query 476 GGAGGGTTCTTGATGT-TACTCGAGACTGGGACATAGATTGGTATCG-CGGTGGTGTCTC 533
||| |||||||||||| | ||| ||||||| | ||||||| ||| || ||| || ||
Sbjct 569 GGAAGGTTCTTGATGTGT-CTCCAGACTGGAAGATAGATTCTTATATTCG-TGGCGTGTC 626
Query 534 TCTCAAGGGAAATGCATA 551
||||||||||||| ||||
Sbjct 627 TCTCAAGGGAAATACATA 644
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 178 bits (96), Expect = 1e-43
Identities = 433/582 (74%), Gaps = 77/582 (13%)
Strand=Plus/Plus
Query 27 GAGCTTTGCAAAGAAGCACC-T--TGCTCAAGCAAGAGTAGCTGCAGCAAAGGAAAAG-G 82
|||||||||||||||| ||| | || |||||||| | ||||| ||||||| |||| |
Sbjct 164 GAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCT---GCAAAGG-AAAGAG 219
Query 83 AGTTTATGGTGGTCATGATGATGGATTTTAGGGTTT-ATCTGATGCA-CGTGAATCTTCA 140
|||||||| ||||| |||||||| |||||||||||| || ||||| | || ||||||||
Sbjct 220 AGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAAT-TGATG-AGAGTCAATCTTCA 277
Query 141 CTACGACAAGGTTGAAT--T-ATGCATGAAACGTCAAGGTACACTTATTTTCCCCGACGC 197
| |||||||||||| | ||| || |||||| ||| || ||||| || | |
Sbjct 278 --A-AACAAGGTTGAATCATCATGTATAAAACGTGAAGCTAAACTTA--TTAGTTTA-G- 330
Query 198 CTCAGATCAAATCT-ATGTA-CGTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATC 255
| ||| || | | || || | |||||||||||||||| ||||||||||||||| ||||
Sbjct 331 -GC-GATGAAGT-TGATATATC-TCAAGTCTTTCACTGCAACGGTTTATTGTTATTCATC 386
Query 256 --C-T---GAAAGACAACCCTAGGCTCGTTGTTTTTAACCCG--T-ATTGTGGG-CA-AC 304
| | |||||||| ||||||| || |||| |||||| | |||| ||| || ||
Sbjct 387 AGCATCACCAAAGACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTG-GGGACATAC 445
Query 305 CACGGT-GGATCGAAGCCACATATAA-TAATCAGAGA-T---T-GGAATTTTAT-TCGTT 356
| | || ||||||| ||||| |||| | || | | | | || || ||| | ||
Sbjct 446 C-C-GTACGATCGAACCCACACATAACT-GCCACATATTCAATAGGTATAATATAT-GTA 501
Query 357 TTCTCTGGGAT---ACAATAGC-AACACCAAATCCCACAAAATCTTGAGATTTATT-TTA 411
| |||| |||| |||| ||| | || | ||||||||||||||||||| ||| || |
Sbjct 502 TGCTCTCGGATACAACAAGAGCTAGCAGCTAATCCCACAAAATCTTGAGGTTTGTTACT- 560
Query 412 TATCATGGTCTTTTCTCTTTGGCTT-TGGCTGAGTTCAAAATCTACGACTTTAACTCTGA 470
|| | ||| | || || ||| |||||||| ||||||||| |||||||||||
Sbjct 561 TA-C-TGG--------ATGAGGGTTATGGATGAGTTCATAATCTACGATTTTAACTCTGA 610
Query 471 TTCATGGAGGGTTCTTGATGTTACTCGAGACTGGGAC-ATA-GATTGGTATCG--CGGTG 526
||||||||||||||||||||| |||| ||| ||| || ||| | || ||| | | ||
Sbjct 611 TTCATGGAGGGTTCTTGATGTCACTCCAGATTGG-ACGATAAG-TTA-TAT-GAACCTTG 666
Query 527 GTGTCTCTCTCAAGGGAAATGCATATTTCTTTGCTAATGAGA 568
| || |||||||||||||||||||| | ||||||| |||||
Sbjct 667 GCGTGTCTCTCAAGGGAAATGCATACTGGTTTGCTACTGAGA 708
> AT3G19470.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6749524-6751014 FORWARD LENGTH=1388
Length=1388
Score = 132 bits (71), Expect = 8e-30
Identities = 102/116 (88%), Gaps = 5/116 (4%)
Strand=Plus/Plus
Query 26 GGAGCTTTGCAAAGAAGCACCTTGCTCAAGCAAGAGTAGCTGCAGCAAAGGAAAAGGAGT 85
||||||||||||||||||||||||||||||||| |||| || |||| | | ||||||||
Sbjct 252 GGAGCTTTGCAAAGAAGCACCTTGCTCAAGCAAAAGTA-CT--AGCAGACGCAAAGGAGT 308
Query 86 TTATGGTGGTCATGATGATGGATTTTAGGGTTTATCTGATGC-ACGTGAATCTTCA 140
||||||||||| |||||||| |||||||||||||| ||||| | || ||||||||
Sbjct 309 TTATGGTGGTCTTGATGATGAATTTTAGGGTTTATTTGATGAGA-GTCAATCTTCA 363
> AT5G28527.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212
Score = 130 bits (70), Expect = 3e-29
Identities = 327/445 (73%), Gaps = 41/445 (9%)
Strand=Plus/Plus
Query 143 ACGACAAGGTTGAATTATGCAT-GAAACGTCAAGGTACACTTATTTTCCCCGACGCCTCA 201
||||||| ||||||| ||| || | | | | ||| || ||||||| || |||| |||
Sbjct 288 ACGACAACGTTGAATCATGTATCG-AGCATGAAGCTAAACTTATTAGCCTAGACGATTCA 346
Query 202 GATCAAATCTATGTA-CGTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATC-CTGA 259
|| || || | ||| | | |||| ||||||||||||||||||||||||||||| | |
Sbjct 347 TATGAAGTCCAAGTATC-TAAAGTTTTTCACTGCGACGGTTTATTGTTATGCATTACA-A 404
Query 260 AAGACAACCCTAGGCTCGTTGTTTTTAACCCGTATTGTGGG-CAA-CCACGGTGGATCGA 317
||||| | ||| |||| | |||| ||||||||||| ||| ||| ||| | ||||||||
Sbjct 405 AAGACCATACTAAGCTCCTAGTTTGGAACCCGTATTG-GGGTCAAACCAAG-TGGATCGA 462
Query 318 AGCCACATATAATAAT-CAGAG-AT-TGGAATTTTATTCGTTTTCTCTGGGATACAATA- 373
| || |||| | || | || | | ||||||| ||||||| | | | |||||| | |
Sbjct 463 A-CC-CATACA-TACTTCATACCAACTGGAATTGTATTCGTATGCGATTGGATACGACAA 519
Query 374 GCAACA-CCAAATCCCACAAAATCTTGAGATTTATTTTATATCATGGTCTTTTCT-CTTT 431
| | || || | | ||||||||||||| ||| || || |||| | | | ||
Sbjct 520 G-AGCAGCCGCAGCT-ACAAAATCTTGAG-TTTCCTTGAT-TCATA-T-TACCCAACTAC 573
Query 432 GGCTTTGGCTGAGT-TCAAAATCTACGACTTTAACTCTGATTCATGGAGGGTTCTTGATG 490
||||| ||| | ||||||||||||| | |||||||| |||||||||||| |||||||
Sbjct 574 --CTTTGT-TGA-TATCAAAATCTACGAGTGTAACTCTGGTTCATGGAGGGTACTTGATG 629
Query 491 T---TACTCGAGACTGGGACA--TAGATTGGT-ATCGCGG-TGGTGTCTCTCTCAAGGGA 543
| | ||| |||| ||| || ||||| | | || | || ||| |||||||||||||||
Sbjct 630 TCGCTGCTCCAGAC-GGG-CAGGTAGAT-GATTAT-GAGGGTGGAGTCTCTCTCAAGGGA 685
Query 544 AATGCATATTTCTTTGCTAATGAGA 568
||| | || | |||| ||| ||||
Sbjct 686 AATACTTACTGGTTTGTTAAAGAGA 710
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 121 bits (65), Expect = 2e-26
Identities = 229/302 (76%), Gaps = 35/302 (12%)
Strand=Plus/Plus
Query 219 TCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATC--C-TGA---AAGACAACCCTAG 272
||||||||||||||||||||||||||||||||||||| | | | ||| ||| ||||
Sbjct 150 TCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGACTAG 209
Query 273 GCTCGTTGTTTTTAACCCGTATTGTGGGCA-ACCACGGTGGATCGAAGCC-ACATATAA- 329
|||||| |||| ||||||||||| ||||| ||| |||| ||||| ||| ||| || |
Sbjct 210 GCTCGTGGTTTGGAACCCGTATTGGGGGCATACC-CGGTCAATCGA-GCCCACACATCAG 267
Query 330 T--AATCAGAGATTGGA-ATTTTATTCGTTTT-CTCTGGGATACAATA-GCAACACCAAA 384
| || || | ||| || | | |||| || | |||| |||||| | | | | || ||||
Sbjct 268 TTCAA-CA-A-ATTCGACAGCT-ATTC-TTATGCTCTCGGATACGACAAG-AGCAGCAAA 321
Query 385 TCCCACAAAATCTTGAGATTTATT--TTATATCATGGTCTTTTCTCTTTGGCTTTGGCTG 442
||||||||||||||||| | |||| || | | | | | | | || || ||
Sbjct 322 TCCCACAAAATCTTGAGGTGTATTACTTGTTTGA-GACC----C-CATT---TTCA--TG 370
Query 443 AGTTCAAAATCTACGACTTTAACTCTGATTCATGGAGGGTTCTTGATGTTACTCGAGACT 502
|||||| ||||||||| ||||||||| |||||||||||||| || |||| |||| |||||
Sbjct 371 AGTTCATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTCATGTCACTCCAGACT 430
Query 503 GG 504
||
Sbjct 431 GG 432
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 75.0 bits (40), Expect = 1e-12
Identities = 83/103 (81%), Gaps = 5/103 (5%)
Strand=Plus/Plus
Query 221 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATC-CTGAAAGACAACCCTAGGCTCGTT 279
||||||||||||||||||||||||||||||||||| || | | | | ||||| ||
Sbjct 329 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATCACT-ATTGGGATC---AGGCTTGTG 384
Query 280 GTTTTTAACCCGTATTGTGGGCAACCACGGTGGATCGAAGCCA 322
|||| ||| || |||||||||||| || |||| ||| || |||
Sbjct 385 GTTTGTAATCCTTATTGTGGGCAAACAAGGTGTATCAAAACCA 427
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 75.0 bits (40), Expect = 1e-12
Identities = 83/103 (81%), Gaps = 5/103 (5%)
Strand=Plus/Plus
Query 221 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATC-CTGAAAGACAACCCTAGGCTCGTT 279
||||||||||||||||||||||||||||||||||| || | | | | ||||| ||
Sbjct 329 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATCACT-ATTGGGATC---AGGCTTGTG 384
Query 280 GTTTTTAACCCGTATTGTGGGCAACCACGGTGGATCGAAGCCA 322
|||| ||| || |||||||||||| || |||| ||| || |||
Sbjct 385 GTTTGTAATCCTTATTGTGGGCAAACAAGGTGTATCAAAACCA 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5