BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg342203 Length=1557 Score E Sequences producing significant alignments: (Bits) Value AT3G20510.1 | Symbols: | Transmembrane proteins 14C | chr3:716... 276 5e-73 > AT3G20510.1 | Symbols: | Transmembrane proteins 14C | chr3:7160677-7162206 FORWARD LENGTH=782 Length=782 Score = 276 bits (149), Expect = 5e-73 Identities = 157/161 (98%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1397 TCATCGCAGCTGCTCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTA 1456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 407 TCATCGCAGCTGCTCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTA 466 Query 1457 TGCCGGCTGGTTTGGTTGCTGGGATCAGTGCTCTCATGACCTGTTTTTACGTATACAAGA 1516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 467 TGCCGGCTGGTTTGGTTGCTGGGATCAGTGCTCTCATGACCTGTTTTTACGTATACAAGA 526 Query 1517 TCTCTACTGGTGGCAATAAATTCCCATCAAAAGCGGAATGA 1557 || ||||||||||||||||||| ||| ||||||| |||||| Sbjct 527 TCGCTACTGGTGGCAATAAATTTCCAGCAAAAGCTGAATGA 567 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76857034395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5