BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342218
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20640.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1576 0.0
> AT3G20640.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7210407-7213299 REVERSE LENGTH=1712
Length=1712
Score = 1576 bits (853), Expect = 0.0
Identities = 989/1052 (94%), Gaps = 20/1052 (2%)
Strand=Plus/Plus
Query 1 ATGGGAGATCATCATGATTTCATCAACTCAGGAAGCTGGTGGAAAGTAtcttcttcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 ATGGGAGATCATCATGATTTCATCAACTCAGGAAGCTGGTGGAAAGTATCTTCTTCTTCT 160
Query 61 tcaccatcttcttcatcttcCATGAGAGCAAGCTCTATTGAATCCGGTGGTTCTGCTGTT 120
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 161 TCACCATCTTCTTCTTCTTCCATGAGAGCAAGCTCTATTGAATCTGGTGGTTCTGCTGTT 220
Query 121 TTCCATGATCATAAGCTtcatcatcatcatcatcatTCTTTAGCTACTACTGATCATCAT 180
||||||| ||||| | | ||||||||||||||||| |||||||||| |||
Sbjct 221 TTCCATG---ATAAG------C-T--TCATCATCATTCTTTAG---CTACTGATCACCAT 265
Query 181 CTTCAGATGATTGGTTTAGGGCTTTCTTCACAATCACCTGTTGATCAATGGAACCAATCT 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 266 CTTCAGATGATTGGTTTAGGACTTTCTTCACAATCACCTGTTGATCAATGGAACCAATCT 325
Query 241 CTCTTACGAGGAGATAGTAAAGCGGAGACAAGCTTTGGTGTGATGCTTCAAGAGAATCTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 CTCTTACGAGGAGATAGTAAAGCGGAGACAAGCTTTGGTGTGATGCTTCAAGAGAATCTC 385
Query 301 AATTTAGATGCGACTTCAAACGCAAACGCTAACACAACGTCATCCACATCTTCTTACCAG 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 AATTTAGATGCCACTTCAAACGCAAACGCTAACACAACGTCATCCACATCTTCTTACCAG 445
Query 361 CTGCAAGAATCTGATTCCTCTCACCAGCACCAAGCTTTGTGGCGAGATCCACAAAGCGAT 420
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 446 CTGCAAGAATCTGATTCCTCTCACCATCATCAAGCTTTGTGGCGAGATCCACAAAGCGAT 505
Query 421 TTCAAACCGCAGATTTTAACGAGTGGTGGTAATCGTGGGTTTTTCTTAGATCATCAATTC 480
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 506 TTCAAACCGCAGATTTTAACGAGTGGTGGTAATCGCGGGTTTTTCTTAGATCATCAGTTC 565
Query 481 AGCCCTCACGGGAGCTCAAGTACCGACAGTAGCACAGTGACATGTCAAGGTTTCGCTGTT 540
|| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 566 AGTCCTCATGGTAGCTCAAGTACCGACAGTAGCACAGTAACATGTCAAGGTTTCGCTGTT 625
Query 541 GACAACTCTTCCAACACCATGTACGCAGCAACAACAACAACTCCTAATTCATCTTCCGGT 600
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 GACAACTCGTCAAACGCCATGTACGCAGCAACAACAACAACTCCTAATTCATCTTCCGGT 685
Query 601 ATGTTTCATCATCAACAAGCAGGTGGTTTTGGCTCTTCCGATCAACAACAGTCGAGGAAT 660
|||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 686 ATGTTTCATCATCAGCAAGCAGGTGGTTTTGGCTCTTCTGATCAACAACCGTCGAGGAAT 745
Query 661 CAGCAGCAG-CAATCTCTCGCCTATTCTCAGTTTGGATCATCCACCGGAAACTATGATCA 719
|| || ||| || ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 746 CATCAACAGTCA-TCTCTTGGCTATTCTCAGTTTGGATCATCCACCGGAAACTATGATCA 804
Query 720 AATGGCGTCAGCGTTACCATCGACTTGGTTTTTAAGATCTTCTCCACC---AAAACCACA 776
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 805 AATGGCGTCAGCGTTACCATCGACTTGGTTTTTAAGATCTTCTCCGCCGCCAAAACCACA 864
Query 777 CAGTCCTTTGAGATTCTCTAACAACGCAACGTTTTGGAACCCTGCGGCTGCCGGAAACGC 836
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 865 CAGTCCTTTGAGATTCTCTAATAACGCAACGTTTTGGAACCCCGCGGCTGCGGGAAACGC 924
Query 837 CGGTCCTCCTCCTCCTCATGACGCGTCTTCTAACTTTTTCCCTGCGTTACAACCGCCGCA 896
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 925 CGGTGCTCCTCCTCCTCATGACGCGTCTTCTAACTTTTTCCCGGCGTTACAACCGCCGCA 984
Query 897 GATTCACCCGCCGAGTTTTGACGAACAACCAAAGAATATAGCGGAGATTCGAGATTCGAG 956
|||||| |||| |||||||||||||||||||||||||||| |||||||| ||||||| ||
Sbjct 985 GATTCATCCGCAGAGTTTTGACGAACAACCAAAGAATATATCGGAGATTAGAGATTCAAG 1044
Query 957 TAGCAGCGAAGTAAAGAGAGGAGGAGGCCATCAGCAGCCGGCGGCAAAAAGAGTTAAGAG 1016
||||| ||||||||||||||||||| | |||| ||||||||||| ||||||| ||||||
Sbjct 1045 TAGCAACGAAGTAAAGAGAGGAGGAAACGATCATCAGCCGGCGGCGAAAAGAGCTAAGAG 1104
Query 1017 CGAAGCAGCGTCTCCGTCGCCCGCTTTCAAGA 1048
|||||||||||||||||| || ||||||||||
Sbjct 1105 CGAAGCAGCGTCTCCGTCACCAGCTTTCAAGA 1136
Score = 477 bits (258), Expect = 1e-133
Identities = 266/270 (99%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 1045 AAGACTGATGCAGCCTCAGTGCTCTCTGAAGCCATTGAATACATTAAGTTCTTACACCAA 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 AAGACTGATGCAGCCTCAGTGCTCTCTGAAGCCATTGAATACATTAAGTTCTTACACCAA 1255
Query 1105 CAAGTTTCAGCTCTGAGCAACCCATACATGAAAAGTGGAGCCTCTTTACAACATCAACAG 1164
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1256 CAAGTTTCTGCTCTGAGCAACCCATACATGAAAAGTGGAGCTTCTTTACAACATCAACAG 1315
Query 1165 AGTGATCATCCCACAGAGCTAGAAGTATCAGAAGAACCAGATCTTAGAAGTCGAGGTTTA 1224
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AGTGATCATTCCACAGAGCTAGAAGTATCAGAAGAACCAGATCTTAGAAGTCGAGGTTTA 1375
Query 1225 TGCTTAGTGCCAGTTTCAAGCACATTTCCAGTGACACACGATACTACTGTAGATTTCTGG 1284
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1376 TGCTTAGTGCCAGTTTCAAGCACATTTCCAGTGACACACGATACTACAGTAGATTTCTGG 1435
Query 1285 ACTCCTACATTTGGTGGGACTTTTAGATAG 1314
||||||||||||||||||||||||||||||
Sbjct 1436 ACTCCTACATTTGGTGGGACTTTTAGATAG 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5