BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg342232 Length=1188 Score E Sequences producing significant alignments: (Bits) Value AT3G20760.1 | Symbols: | Nse4, component of Smc5/6 DNA repair ... 1700 0.0 > AT3G20760.1 | Symbols: | Nse4, component of Smc5/6 DNA repair complex | chr3:7256656-7259854 REVERSE LENGTH=2442 Length=2442 Score = 1700 bits (920), Expect = 0.0 Identities = 1075/1150 (93%), Gaps = 10/1150 (1%) Strand=Plus/Plus Query 1 ATGAGAAACTCGGTGAAACGGGAAGCGAAATTAACCAGAGATCGCAGCAGCAGAAGAGAA 60 |||||||||||||||||| ||||| || |||||||| ||||||||||||| ||||||||| Sbjct 760 ATGAGAAACTCGGTGAAATGGGAAACGGAATTAACCGGAGATCGCAGCAGGAGAAGAGAA 819 Query 61 GCCGGTGAGTCCTCTGAGAGACCGAAA-ATCGTGAAGAAGGAGAAGCAG-AGTAAAACCG 118 |||| ||||||||| |||| ||| ||| ||||| ||||||||||||| | ||||| |||| Sbjct 820 GCCGATGAGTCCTCGGAGACACC-AAAGATCGTAAAGAAGGAGAAGC-GTAGTAAGACCG 877 Query 119 TTATTGCTTCATTACGGCCTCAAGAACCACCGATTCAGGAAGAGGACGAACAAGGAATTG 178 | ||||||||||||||||||||| |||| |||||||||||||| || ||||||||||||| Sbjct 878 TAATTGCTTCATTACGGCCTCAACAACCGCCGATTCAGGAAGAAGAAGAACAAGGAATTG 937 Query 179 CTGATCGGAGAGCTATAAGATCTCAGTACCTTGCTCTTACCCATC-AGATTAAAGATGCT 237 |||||||||||||||||||||||||||| |||||||||||||| | |||| ||||||||| Sbjct 938 CTGATCGGAGAGCTATAAGATCTCAGTATCTTGCTCTTACCCA-CAAGATCAAAGATGCT 996 Query 238 AAAGATGATTTGACAAAAATTGATTCTGACAAGTTTAAGC-GTATCATTAATGAGGTTGA 296 |||||||| |||||||||||||||||| ||||||| || | ||||||||||||||||||| Sbjct 997 AAAGATGACTTGACAAAAATTGATTCTAACAAGTTCAA-CAGTATCATTAATGAGGTTGA 1055 Query 297 GAATTTGCATCAGAAAGTTAAGAAGCCTAGAGAGCAAATTGCTGATGCGGAGGCGCTTTT 356 ||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 1056 GAATTTGCACCAGAAAGTTCGGAAGCCTAGAGAGCAGATTGCTGATGCGGAGGCGCTTTT 1115 Query 357 AGATTTAGCGAATAGTGTGGTTTCATCGGTGAAATCGCAATCTGCTCATGGAGGTGTTTC 416 |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1116 GGATTTAACGAATAGTGTGGTTTCATCGGTGAAATCGCAATCAGCTCATGGTGGTGTTTC 1175 Query 417 TCCAGCTGAGTTTGTTAATGCCTTGATCAATGGGTTTGGGAAAACTTGTTTAAGAATTGA 476 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 1176 TCCAGCTGAGTTTGTTAATGCCTTGATCAATGGGTTTGGCAAAACTTCTTTAAGAATTGA 1235 Query 477 TGCTGATGACAATACACAAGTGTCATTGAAGTGGAAGGACCTTGGGTTTACGGTCTGCTC 536 ||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| || Sbjct 1236 TGCTGATGAAAATACACAAGTGTCAATGAAGTGGAAGGATCTTGGGTTTACGGTCTGTTC 1295 Query 537 TACAGTTATGGTATCATGTGGTTGTACAACAATGATGGGTCCTATGGATAGTGAATTGAA 596 || ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1296 CACGGTTTTGGTATCATGTGGTTGTACAACAATGATGGGTCCTATGTATAGTGAAATGAA 1355 Query 597 ACAAAGGAAAAGGT-CAGTGGGCAACAGAAAACGTACAAAGCCTGGTGTTGGTGTTAAGC 655 ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1356 ACAAAGGAAAA-GTAGAGTGGGCAACAGAAAACGTACAAAGCCTGGTGCTGGTGTTAAGC 1414 Query 656 CAGAGGAGGTTGATGATAAAGAAGGTGAAAAGAAAAGTGATACAGACAATAACATGGCAG 715 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1415 CAGAGGAGGTTGATGATACAGAAGCTGAAAAGAAAAGTGATACAGACAATAACATGGCAG 1474 Query 716 TAATGTTTAACATCTTGAGGAAAAACAAACGTGTCAAGATTGAAAATTTGGTGCTCAATA 775 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 1475 TAATGTTTAACATCTTGCGGAAAAACAAACGTGTCAAGATTGAGAATTTGGTGCTCAATA 1534 Query 776 GGAAATCATTTGCTCAGACAGCAGAGAATGTGTTCGCACTATCATTCTTGGTGAAAGATG 835 ||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||| Sbjct 1535 GGAAATCATTTGCTCAGACAGCAGAGAATATGTTCGCACTTTCATTCCTGGTGAAAGATG 1594 Query 836 GACGAGTTGAGATAACTGTCGATAACAATGGTTCTCATTTCGTTGAGCCAAGGAATGCTC 895 |||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 1595 GACGTGTTGAGATAACTGTTGATAACAATGGTTCTCATTTTGTTGAGCCAAGGAATGCTC 1654 Query 896 CTGCAGCAAACCTGGTGCTGTCAGGGGAGGTCGCTTACAACCATTTCGTACTTAGATTTG 955 ||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| Sbjct 1655 CTGCAGCAAACCTGGTGCTGTCAGGGGAGGTCGCTTATAACCATTTTGTTCTTAGATTTG 1714 Query 956 ATTACAAAGATTGGGAGCCAATGAGCACAATGGTGGCAGTGGGAGAGGAGCTGATGCCAC 1015 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1715 ATTACAAAGATTGGGAGCCAATGAGCAAAATGGTGGCAGTGGGAGAGGAGCTGATGCCAC 1774 Query 1016 ACAGGGAAACCAAAGTCGCACAAGATTCAAGAGAACTGTCGAGGAAACAAGGTTCGGTGA 1075 ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| Sbjct 1775 TCAGGGAAACCAAAGTTGCTCAAGATTCAATAGAACTGTCGAGGAAACAAGGTTCGGTGA 1834 Query 1076 TTCAAGATGAAACGGTTGTCGAAGATTCTTCTAACATCGAAGGCGATAATAAAGATAGTC 1135 ||||||| |||||||| |||||||||||||||||||| |||||||||||| |||||||| Sbjct 1835 TTCAAGAGGAAACGGTCGTCGAAGATTCTTCTAACATGGAAGGCGATAATGAAGATAGTA 1894 Query 1136 ATAATGGTGG 1145 | |||||||| Sbjct 1895 AAAATGGTGG 1904 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58333033290 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5