BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342232
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20760.1 | Symbols: | Nse4, component of Smc5/6 DNA repair ... 1700 0.0
> AT3G20760.1 | Symbols: | Nse4, component of Smc5/6 DNA repair
complex | chr3:7256656-7259854 REVERSE LENGTH=2442
Length=2442
Score = 1700 bits (920), Expect = 0.0
Identities = 1075/1150 (93%), Gaps = 10/1150 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAACTCGGTGAAACGGGAAGCGAAATTAACCAGAGATCGCAGCAGCAGAAGAGAA 60
|||||||||||||||||| ||||| || |||||||| ||||||||||||| |||||||||
Sbjct 760 ATGAGAAACTCGGTGAAATGGGAAACGGAATTAACCGGAGATCGCAGCAGGAGAAGAGAA 819
Query 61 GCCGGTGAGTCCTCTGAGAGACCGAAA-ATCGTGAAGAAGGAGAAGCAG-AGTAAAACCG 118
|||| ||||||||| |||| ||| ||| ||||| ||||||||||||| | ||||| ||||
Sbjct 820 GCCGATGAGTCCTCGGAGACACC-AAAGATCGTAAAGAAGGAGAAGC-GTAGTAAGACCG 877
Query 119 TTATTGCTTCATTACGGCCTCAAGAACCACCGATTCAGGAAGAGGACGAACAAGGAATTG 178
| ||||||||||||||||||||| |||| |||||||||||||| || |||||||||||||
Sbjct 878 TAATTGCTTCATTACGGCCTCAACAACCGCCGATTCAGGAAGAAGAAGAACAAGGAATTG 937
Query 179 CTGATCGGAGAGCTATAAGATCTCAGTACCTTGCTCTTACCCATC-AGATTAAAGATGCT 237
|||||||||||||||||||||||||||| |||||||||||||| | |||| |||||||||
Sbjct 938 CTGATCGGAGAGCTATAAGATCTCAGTATCTTGCTCTTACCCA-CAAGATCAAAGATGCT 996
Query 238 AAAGATGATTTGACAAAAATTGATTCTGACAAGTTTAAGC-GTATCATTAATGAGGTTGA 296
|||||||| |||||||||||||||||| ||||||| || | |||||||||||||||||||
Sbjct 997 AAAGATGACTTGACAAAAATTGATTCTAACAAGTTCAA-CAGTATCATTAATGAGGTTGA 1055
Query 297 GAATTTGCATCAGAAAGTTAAGAAGCCTAGAGAGCAAATTGCTGATGCGGAGGCGCTTTT 356
||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1056 GAATTTGCACCAGAAAGTTCGGAAGCCTAGAGAGCAGATTGCTGATGCGGAGGCGCTTTT 1115
Query 357 AGATTTAGCGAATAGTGTGGTTTCATCGGTGAAATCGCAATCTGCTCATGGAGGTGTTTC 416
|||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1116 GGATTTAACGAATAGTGTGGTTTCATCGGTGAAATCGCAATCAGCTCATGGTGGTGTTTC 1175
Query 417 TCCAGCTGAGTTTGTTAATGCCTTGATCAATGGGTTTGGGAAAACTTGTTTAAGAATTGA 476
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1176 TCCAGCTGAGTTTGTTAATGCCTTGATCAATGGGTTTGGCAAAACTTCTTTAAGAATTGA 1235
Query 477 TGCTGATGACAATACACAAGTGTCATTGAAGTGGAAGGACCTTGGGTTTACGGTCTGCTC 536
||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct 1236 TGCTGATGAAAATACACAAGTGTCAATGAAGTGGAAGGATCTTGGGTTTACGGTCTGTTC 1295
Query 537 TACAGTTATGGTATCATGTGGTTGTACAACAATGATGGGTCCTATGGATAGTGAATTGAA 596
|| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1296 CACGGTTTTGGTATCATGTGGTTGTACAACAATGATGGGTCCTATGTATAGTGAAATGAA 1355
Query 597 ACAAAGGAAAAGGT-CAGTGGGCAACAGAAAACGTACAAAGCCTGGTGTTGGTGTTAAGC 655
||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1356 ACAAAGGAAAA-GTAGAGTGGGCAACAGAAAACGTACAAAGCCTGGTGCTGGTGTTAAGC 1414
Query 656 CAGAGGAGGTTGATGATAAAGAAGGTGAAAAGAAAAGTGATACAGACAATAACATGGCAG 715
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1415 CAGAGGAGGTTGATGATACAGAAGCTGAAAAGAAAAGTGATACAGACAATAACATGGCAG 1474
Query 716 TAATGTTTAACATCTTGAGGAAAAACAAACGTGTCAAGATTGAAAATTTGGTGCTCAATA 775
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1475 TAATGTTTAACATCTTGCGGAAAAACAAACGTGTCAAGATTGAGAATTTGGTGCTCAATA 1534
Query 776 GGAAATCATTTGCTCAGACAGCAGAGAATGTGTTCGCACTATCATTCTTGGTGAAAGATG 835
||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 1535 GGAAATCATTTGCTCAGACAGCAGAGAATATGTTCGCACTTTCATTCCTGGTGAAAGATG 1594
Query 836 GACGAGTTGAGATAACTGTCGATAACAATGGTTCTCATTTCGTTGAGCCAAGGAATGCTC 895
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1595 GACGTGTTGAGATAACTGTTGATAACAATGGTTCTCATTTTGTTGAGCCAAGGAATGCTC 1654
Query 896 CTGCAGCAAACCTGGTGCTGTCAGGGGAGGTCGCTTACAACCATTTCGTACTTAGATTTG 955
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1655 CTGCAGCAAACCTGGTGCTGTCAGGGGAGGTCGCTTATAACCATTTTGTTCTTAGATTTG 1714
Query 956 ATTACAAAGATTGGGAGCCAATGAGCACAATGGTGGCAGTGGGAGAGGAGCTGATGCCAC 1015
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1715 ATTACAAAGATTGGGAGCCAATGAGCAAAATGGTGGCAGTGGGAGAGGAGCTGATGCCAC 1774
Query 1016 ACAGGGAAACCAAAGTCGCACAAGATTCAAGAGAACTGTCGAGGAAACAAGGTTCGGTGA 1075
||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct 1775 TCAGGGAAACCAAAGTTGCTCAAGATTCAATAGAACTGTCGAGGAAACAAGGTTCGGTGA 1834
Query 1076 TTCAAGATGAAACGGTTGTCGAAGATTCTTCTAACATCGAAGGCGATAATAAAGATAGTC 1135
||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1835 TTCAAGAGGAAACGGTCGTCGAAGATTCTTCTAACATGGAAGGCGATAATGAAGATAGTA 1894
Query 1136 ATAATGGTGG 1145
| ||||||||
Sbjct 1895 AAAATGGTGG 1904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5