BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342275
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21260.3 | Symbols: | Glycolipid transfer protein (GLTP) fa... 1142 0.0
> AT3G21260.3 | Symbols: | Glycolipid transfer protein (GLTP)
family protein | chr3:7464020-7465785 REVERSE LENGTH=814
Length=814
Score = 1142 bits (618), Expect = 0.0
Identities = 676/704 (96%), Gaps = 4/704 (1%)
Strand=Plus/Plus
Query 1 ATGAAACGAAAGAGATGTGAAATGGAAGAGACAACAAAGAAGAAGAAGATGACAGAGATT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGAAACGAAAGAGATGTGAAATGGAAGAGACAACGAAGAAGAAGAAGATGACAGAGATT 60
Query 61 GGTTCTGCCATTGAAGAACTCTCTGTTCTTTCTATAGCCAAGACCACAATAGTTACCACC 120
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GGATCTGCCATTGAAGAACTCTCTGTTCTTTCCATAGCCAAGACCACAATAGTTACCACC 120
Query 121 GAAAATGAAGCCACCAACAT-AGTCAATTTACCTTTGAAGCCTCTCCTCTCTTTCTGCAA 179
||||| ||||||| |||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 121 GAAAAAGAAGCCATCAACATCA-TCAATTTACCTTTGAAGCCTCTCCTATCTTTCTGCAA 179
Query 180 CATTATCGTCCAAGTTCTTGATAAGATTGGCCCGACAATGGCTGTTCTCCGACATGACAT 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATTATAGTCCAAGTTCTTGATAAGATTGGCCCGACAATGGCTGTTCTCCGACATGACAT 239
Query 240 TGATCAAAATATTCAAAGGTTAGAGAGGATGTGGGAATCTGATCCTCTTGTTTACTCAAA 299
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 240 TGATCAAAATATTCAAAGGTTAGAGAAGATGTGGGAATCTGATCCTCTTGTGTACTCAAA 299
Query 300 TTTGGTTGAGATACTGAGAAAAGAAGCCAAGGAGGGATCCTCTAGGAAACCTAAAAGCTG 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 TTTAGTTGAGATACTGAGAAAAGAAGCCAAGGAGGGATCCTCTAGGAAACCTAAAAGTTG 359
Query 360 TAGCAGAGCTGCTCTTTGGCTAACGAGAGCGATGGATTTTACATTAGCGCTATTACAACG 419
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 360 TAGTAGAGCTGCTCTTTGGCTAACGAGAGCGATGGATTTTACATTGGCGCTATTGCAACG 419
Query 420 GCTGGTCAAAGACATGTCACAAAACATGGAACAAGCCATAGAAGAATGTTATAATTTGAC 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCTGGTGAAAGACATGTCACAAAACATGGAACAAGCCATAGAAGAATGTTATAATTTGAC 479
Query 480 TATAAAGCCATGGCATGGATGGATCTCTTCTGCCGCTTTTAAGGTGGCTCTTAAACTGGT 539
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TATAAAACCATGGCATGGATGGATCTCTTCTGCTGCTTTTAAGGTGGCTCTTAAACTGGT 539
Query 540 TCCAAACAACAACACATTCATCAATGTGCTTGCGGCGAAAGAAGAAACTCACCAAATTGT 599
|||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||
Sbjct 540 TCCAAACAACAACACATTCATCAATGTGCTTGCGGCGAAAGACGAGACACACCAAATGGT 599
Query 600 CCAAGATGATAT-ACGAAGTCTAATTTCATTGCTCATTCCACTTCTAAGCCAACTCCATT 658
|||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 CCAAGATGATATTAC-AAGTCTAATTTCGTTGCTCATTCCACTTCTAAGCCAACTCCATT 658
Query 659 CTATTTTGGAATTATACGAAGTGAGCAAGCTAAAGTCACCGTGA 702
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 CTATTTTGGAATTATACGAAGTGAGCAAATTAAAGTCACCGTGA 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5