BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342282
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21320.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2344 0.0
> AT3G21320.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G25930.1);
Has 63 Blast hits to 58 proteins in 21 species:
Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants
- 58; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr3:7499053-7501841 REVERSE LENGTH=2419
Length=2419
Score = 2344 bits (1269), Expect = 0.0
Identities = 1513/1628 (93%), Gaps = 28/1628 (2%)
Strand=Plus/Plus
Query 1 ATGGGAGGAATGAAAGATGAAGCAAAGAGGATAACAATTCCACCATTGTTTCCAAGGGTT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 442 ATGGGAGGAATGAAAGATGAAGCAAAGAGGATAACAATTCCTCCATTGTTTCCAAGGGTT 501
Query 61 CATGTGAATGATACTGGAAGAGGAGGCTTATCTCAACCATTTGATGGCAAAACAATGTCT 120
||||| ||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 502 CATGTCAATGATACTGGAAGAGGAGGCCTGTCTCAACAATTTGATGGCAAAACAATGTCT 561
Query 121 -TTGATCTCTTCTAAACGTCCCAATCTTCCTTCTCCGA-C--CAATATCTCTGATTCTCT 176
| | ||||||||||||||||||||||||||||||||| | ||| || |||||||||||
Sbjct 562 CTCG-TCTCTTCTAAACGTCCCAATCTTCCTTCTCCGACCAACAACATATCTGATTCTCT 620
Query 177 TTCCACTTTTTCTTTGTCAATTCCTCCACCACCAAACAATGCCCGTCTTATTGATGGACC 236
||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 621 TTCCACTTTCTCTTTGTCTCTTCCTCCACCACCAAACAATGCCCGTCTCATTGATGGACC 680
Query 237 TGAAAAGAATCAGTTTTCACCAATCTGCAACACAAAGTTTGAGGGGAAGATGAATAAGAA 296
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 681 TGAAAAGAATCAGTTTTCACCAATCTACAACACAAAGTTTGAGGGGAAGCTGAATAAAAA 740
Query 297 AGGCATGAATTATCCAAGTCCTAGAGGATCATCAGTTACTAATACTAAACCTAGTTCAAT 356
|||||| |||||| ||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 741 AGGCATAAATTATACAAGTCCTAAAGGATCATCAGTTACTAATACTAAGCCTAGTTCAAT 800
Query 357 AAAACAAAATGAGTACCTCAAGAGCCTTACCAACCTGGATTCTATTAAGGT-TCCTGA-T 414
||||||||||||||||||||||| |||||||| | ||||||||||||| || |||| | |
Sbjct 801 AAAACAAAATGAGTACCTCAAGAACCTTACCAGCTTGGATTCTATTAA-GTCTCCT-ATT 858
Query 415 GTTAGACGCTCAGAAACAGATCCAAAAGCAAACACAGATTTGTCACTCCAGTTTTGTACT 474
|||| || |||||||| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 859 GTTATACACTCAGAAATAGATCCACAAGCAAACACAGATTTGTCACTCCAATTTTGTACT 918
Query 475 AGCAGTAGCAGTAAAGCCGGAGGAGA---AGTTATTGGTTCTAAGATCCTTTTGTCAGAA 531
||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||
Sbjct 919 AGCGGTAGCAGTAAACCCGGAGGAGAGGCTGTTGTTGGTTCTAAGATCCTTTTGTCAGAA 978
Query 532 TGTTTGGAAGATGAAAGCCAGAATGGGTCTCCTAAGGTGATGAAAACTCAATTATATAGA 591
||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||
Sbjct 979 CGTTTGGAAGATGAAAACCAGAATGGGTCTCCCAATGTGATGAAAACTCAATCATATAGA 1038
Query 592 AGAAACTTTGCTGAGTTTAGCAGTGAAACTCTAAAGAAGCCTAAAACTCTGCCTCGGCGT 651
||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||
Sbjct 1039 AGAAACTTTGCTGAGTTTAACAATGAAACTCAAAAGAAGCCCAAAACTCTGCCTCGGCGT 1098
Query 652 GAACAAGATGCTTCAGACTGCTCTGCAATAGACTCTATGTCTGGTATAAGTGCATCTTCT 711
||||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1099 GAACAAGTTGCTTCAAACTGCTCTGCAATAGAGTCTTTGTCTGGTATAAGTGCATCTTCT 1158
Query 712 TATAATGTTGCCAGAGTGATAGGTGAAAGGAGGTTTTGGAAGATGAG-------A--A-C 761
||| || ||||||||||||| ||||||| |||||||||||||||||| | | |
Sbjct 1159 TATGATATTGCCAGAGTGATTGGTGAAAAGAGGTTTTGGAAGATGAGAACATATATGATC 1218
Query 762 --TCAGCAAAAGATCTTTGCCGGGCAAGTATTTGAGCTGCATAGACTCATAATGGTTCAA 819
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1219 AATCAGCAAAAGATCTTTGCCGGGCAAGTATTTGAGCTCCATAGACTGATAATGGTTCAA 1278
Query 820 AAGATGATTGCGAAATCGCCAAACTTGCTTCTTGAAAGTAAGCTTAATGGCGGCAAACAT 879
|||||| ||||||| |||||||||||| |||||||||||||||||||||| | |||||||
Sbjct 1279 AAGATGGTTGCGAAGTCGCCAAACTTGTTTCTTGAAAGTAAGCTTAATGGTGTCAAACAT 1338
Query 880 GGGACAATGAGGTCATCCCATCAGC-TGACAATGGCCGCTTCAAAGATTAAAAAACCAAA 938
|| |||||||||||||| ||||||| || ||||||| ||||||||| ||| ||| |||||
Sbjct 1339 GGTACAATGAGGTCATCACATCAGCTTG-CAATGGCGGCTTCAAAGGTTAGAAAGCCAAA 1397
Query 939 CATTGAGAATCACAAACCTGTACCTGAAGAATATCCAGAGCATATGAAACCAAAGCTTCC 998
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 CACTGAGAATCACAAACCTGTACCTGAAGAATATCCAGAGCATATGAAACCAAAGCTTCC 1457
Query 999 TCTACCTTCCATAAGCAAAGAACTCGTGACCCCAATTTGGCCACAACAGCTACTTCCTCC 1058
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1458 TCTACCTTCCATAAGCAAAGAACTCGTGACTCCTATTTGGCCACAACAGCTACTTCCTCC 1517
Query 1059 TCCTGGAAACCAATGGTTAGTTCCTGTAATATCTCCTTCAGAAGGTCTGGTCTATAAACC 1118
||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||
Sbjct 1518 TCCTGGAAACCAATGGTTAGTTCCTGTAATAACTGATTCAGACGGTCTGGTCTATAAACC 1577
Query 1119 ATATGCAGGACCATGTCCTCCTCCTTCTTCAGCCTTCATGGTTCCAGTTTATGGCCAAGA 1178
|| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1578 ATTTCCAGGACCATGTCCTCCTTCTTCTTCAGCCTTCATGGTTCCAGTTTATGGCCAAGA 1637
Query 1179 TTCCATT-GAGACAGCATTCAGGTTCCCTGTTTCTTCTCAATTTAGCCACAGCTATTTCC 1237
||| | | |||||| |||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 1638 TTC-ACTCGAGACACCATTCAGGTTCCCTGTTTCTTCTCCATTCAGCCACAGCTACTTCC 1696
Query 1238 CACCACCTAACGCGAGGACAACAGTTGACCAAACAAACCCGTTTGGTCAGTGTCAAAGAT 1297
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1697 CACCTCCTAACGCGAGGACAACAGTTGACCAAACAAACCCGTTTGGTCAGTTTCAAAGAT 1756
Query 1298 GGTCTAACACATCAAGCCACATGACTCAAGCCATACCATTTTCCTTAAAGAAGTCTCAGG 1357
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1757 GGTCTAACACATCAAGCCACATGACACAAGCCATTCCATTTTCTTTAAAGAAGTCTCAGG 1816
Query 1358 AATCTAATGACAGTGACATACATGGAAGCACAGCTTCAAGTCCACCAGAGAAGCATAAAT 1417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 AATCTAATGACAGTGACATACATGGAAGCACAGCTTCAAGTCCACCAGAGAAGCATAAAC 1876
Query 1418 TTGAAGTGCTTCCTCTGTTTCCTACAGAGCCTACCCATCAAACTGATGAGTACAAGGAGA 1477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1877 TTGAAGTGCTTCCTCTGTTTCCTACAGAGCCTACCCATCAAACTGATGAGTACAAGCAGA 1936
Query 1478 AACAGCAACCGGTGCTTCGTGCCATTAAAGCCGTTCCTCATACTTCAACATCTGCCTCTG 1537
||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1937 AACAGCAACCGATGCTTCGCGCCATTAAAGCCGTTCCTCATAATTCAACATCTGCCTCTG 1996
Query 1538 AATCTGCTGCAAGGATCTTCCGTTCCATTCAGGAAGAAAGGAGGGACTCAGATCATATGA 1597
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1997 AATCTGCTGCAAGGATCTTCCGTTTCATTCAGGAAGAAAGGAGGGACTCAGATCATATGA 2056
Query 1598 TTAGTTAG 1605
||||||||
Sbjct 2057 TTAGTTAG 2064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5