BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342290
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21410.1 | Symbols: | F-box and associated interaction doma... 1570 0.0
> AT3G21410.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7536719-7537951 REVERSE LENGTH=1233
Length=1233
Score = 1570 bits (850), Expect = 0.0
Identities = 1055/1153 (92%), Gaps = 17/1153 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCCAAAGAGTGTTCATTGTTGCCTTCTGAATTATGTGAAGAAATACTTTGTCGA 60
|||||||||||||| |||||||||||||||| ||| |||| |||||||||||||||| |
Sbjct 88 ATGGATTCCAAAGAATGTTCATTGTTGCCTTTTGAGTTATTTGAAGAAATACTTTGTAGG 147
Query 61 GTTCCAACTAAATCTCTTATACGACTCAAGTTAACGTGCAAACGATGGCTCGCTCTTTTC 120
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 148 GTTCCAACTAAATCTCTTTTACGACTCAAGTTGACGTGCAAACGATGGCTCGCTCTTTT- 206
Query 121 CAA-GACAAGAGGTTCATTTACAAGCACTTAGCTCTTCTTCAAGAACATATCATAAGAAC 179
||| |||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 207 CAACGACAAGAGATTCATTTACAAGCACTTAGCTCTTGTTCGGGAACATATCATAAGGAC 266
Query 180 CAATCATATGGTTAAGATCATCAACCCGGTAATTGGAGCTTGCTCATCTTTATCACTTCC 239
|||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 267 CAATCAAATGGTTAAGATCATCAACCCGGTAGTTGGAGCTTGCTCATCTTTTTCACTTCC 326
Query 240 TAACGAGTTTCAAGTTAGAGGTGACATTTATACTATGGTTCACTGCGACGGATTATTGTT 299
|||| |||||||||| | |||||| |||||||||||||||| ||||||||| ||||||||
Sbjct 327 TAACAAGTTTCAAGTGAAAGGTGAGATTTATACTATGGTTCCCTGCGACGGGTTATTGTT 386
Query 300 ATGCATTTTCGAATCAGGTTCAATGGCAGTTTGGAACCCATGTTTGAACCAGCTTAGATG 359
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 387 ATGCATTTTCGAAACAGGTTCAATGGCAGTTTGGAACCCATGTTTGAACCAGGTTAGATG 446
Query 360 GATCAAGC-CCTTGACTTCTTCTTACAAGGG-T-T-GCTGCTACGGCATTGGATACGACT 415
|||| | || ||| | |||||| | ||| | | | ||||||||||||||||| |||
Sbjct 447 GATCTTTCTCC-TGAATCCTTCTTTCCGGGGTTGTAGTTGCTACGGCATTGGATATGACG 505
Query 416 GTTTGTCTCGAGATAACTACAAAATCTTGAAGTTCGTAAACGGTGCTTTTACGAAAAACG 475
|||| ||||| |||| |||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 506 GTTTATCTCGGGATAGCTACAAAATCTTGAGGTTCGTAAACGGTGTTTTTACCAAAAACG 565
Query 476 AGTATGCAAATACGGGATCTTACAAACCAGAAGTTGACATCTATGAGTTCAAGTCTAATT 535
|||||||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||
Sbjct 566 AGTATGCAAATACGGGCTCTTACAAACCAGAGGTTGATATTTATGAATTAAAGTCTAATT 625
Query 536 CTTGGAAAACTTTTAAAGTTTCTTTGGATTGGCATGTGGTTACGCATTGTAAAGGTGCGT 595
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 626 CTTGGAAAACTTTTAAAGTTTCTTTGGATTGGCATGTGGTTTTGCGTTGTAAAGGTTTGT 685
Query 596 CACTCAAAGGAAACATGTATTGGATTTCTAAATGGAATCGTAAACCCGATATCTTCATCC 655
|||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct 686 CACTCAAAGGAAACATGTATTGGATTGCTAAATGGAACCGTAAACCCGACATCTTCATCC 745
Query 656 AAAGTTTTAACTTCTCTACAGAGACATTCGAGCCATTGTGCACTACTCTTCCC-TTTGAG 714
|||| ||||||||||||||||||||||| ||||| ||||| || |||||||| || | |
Sbjct 746 AAAGCTTTAACTTCTCTACAGAGACATTTGAGCCCTTGTG--CT-CTCTTCCCGTTAG-G 801
Query 715 TATAGA-GTATGTGATGTTGTAGCTTTATCAGCTTTCAGAGGAGACAATCTTTCTTTGTT 773
||| || ||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 802 TAT-GATGTACATAATGTTGTAGCTTTATCAGCTTTCAAAGGAGACAATCTTTCTTTGTT 860
Query 774 ACACCAAAGCAAAGAAACATCAAAGATCGAGGTATGGGTTACGAACAAGGTTAAGAACGG 833
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 861 ACACCAAAGCAAAGAAACATCAAAGATCGATGTATGGGTTACTAACAAGGTTAAGAACGG 920
Query 834 AGTGAGTATCTCATGGACCAAGTTCTTTATTGTGACAAGATCTGATCTCCCGGTGTTGGT 893
||||||||||| |||||||||||| |||| |||||||||| ||||||||||||| ||| |
Sbjct 921 AGTGAGTATCTTATGGACCAAGTTATTTAGTGTGACAAGACCTGATCTCCCGGTATTGCT 980
Query 894 GGCTTCTGAGAATATTTCTTATCCGGTGCATTTCATTGATAAGAATAATAGGATTGTAGT 953
||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 981 GGCTTTTGAGAATCTTTCTTATCCGGTGCATTTCATTGATAAGAATAATAGGATCGTAGT 1040
Query 954 ATGTTGTGAGGAAGTATTGGCAGATAGGAGAAACGTAGCCGTCAACATCTACGTTATTGG 1013
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1041 ATGTTGTGAGGAAGTATTGGCAGATAAAAGAAACGTAGCCGTCAACATCTACGTTATTGG 1100
Query 1014 AGAGGATGAGATCAAAAGCCAAGATGAGATAGAACAGCATCAAATAGGTTTTAGTTGGCC 1073
|||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 1101 AGAGGATGAGATCAAAAGCCAAGATGAGATAGAACAACACCAACTAGGTTTTAGTTGGCC 1160
Query 1074 TTATATCTCCGGCTATGCATATCTTCCAAGTCTTGTTCCGGTTCCATCATCGGAGGATAA 1133
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TTTTATCTCCGGCTATACATATCTTCCAAGTCTTGTTCCGGTTCCATCATCGGAGGATAA 1220
Query 1134 -AC-CC-GAATAA 1143
|| || ||||||
Sbjct 1221 TACACCAGAATAA 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5