BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342300

Length=1479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21490.1 | Symbols:  | Heavy metal transport/detoxification ...   584    7e-166
  AT1G33840.1 | Symbols:  | Protein of unknown function (DUF567) ...  58.4    2e-07 


> AT3G21490.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr3:7573065-7573669 FORWARD LENGTH=411
Length=411

 Score =  584 bits (316),  Expect = 7e-166
 Identities = 358/379 (94%), Gaps = 0/379 (0%)
 Strand=Plus/Plus

Query  1101  CAGGTATATGGATGTCGAATTCAATATATCGATGCATTGCAACGAATGCGAGAGAAAAAT  1160
             ||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct  33    CAGATATATGGATGTCGAATTCAATGTATCGATGCATTGCAACGACTGCGAGAGAAAAAT  92

Query  1161  CGCTAGAGTTATTTCCAAATTCAAAGGAGTTGAAACGTTTGTGACGGATATGATTAATCA  1220
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  93    CGCTAGAGTTATTTCCAAATTCAAAGGAGTTGAAACGTTTGTGACGGATATGATTAACCA  152

Query  1221  TAAGGTTATGGTCAAGGGTAAGATTGATCCGAACAAGTTGTTGAAGAAACTCAAGAAGAA  1280
              |||||| |||||| ||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct  153   CAAGGTTGTGGTCAGGGGAAAGATTGATCCGAACAAGTTGTTGAAGAAGCTTAAGAAGAA  212

Query  1281  GACTGGTAAAAGAGTGAAGATTGTAGTAAAGGAAGAGAAAGATGAAGAATCTAGTAAAGA  1340
             |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct  213   GACTGGCAAAAGAGTGAAGATTGTAGTTAAGGAAGAGAAAGGTGAAGAATCTAGTAAGGA  272

Query  1341  GGACGAAAATGTTCTCGAGATTGATATGGAATCGATTGGTTTAAGGGATCAGTCGATTTT  1400
             | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct  273   GAACGAAAATGTTCTCGAGATTGATATGGAATCGATTTGTTTAGGGGATCAGTCGATGTT  332

Query  1401  CGGGTTTTGTGATTGGGAGATGGAGAAATTTATGGTGTTTAGCGATGAAAACGCCAATGC  1460
             |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct  333   CGGGTTTTGTGATTGGGAGATGGAGAAATTTATGGTGTTTAGTGATGAAAACGTCAAAGC  392

Query  1461  CATTTGTTCTATTTCTTAG  1479
             |||||||||||||||||||
Sbjct  393   CATTTGTTCTATTTCTTAG  411


> AT1G33840.1 | Symbols:  | Protein of unknown function (DUF567) 
| chr1:12283862-12285306 REVERSE LENGTH=693
Length=693

 Score = 58.4 bits (31),  Expect = 2e-07
 Identities = 37/40 (93%), Gaps = 0/40 (0%)
 Strand=Plus/Plus

Query  1042  AAGTATGTGAAAGAGGGACATAACAGATTTCATCTGTTAG  1081
             |||| | || ||||||||||||||||||||||||||||||
Sbjct  654   AAGTTTATGGAAGAGGGACATAACAGATTTCATCTGTTAG  693



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 72941391885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5